Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19579 | 5' | -61.6 | NC_004686.1 | + | 56109 | 0.7 | 0.203742 |
Target: 5'- gCGGCCgGGuuGGCGGGUGCCGgGcgGg -3' miRNA: 3'- -GCCGGgCUggUCGCCCGUGGCgUuaU- -5' |
|||||||
19579 | 5' | -61.6 | NC_004686.1 | + | 16992 | 0.71 | 0.17896 |
Target: 5'- gGGCCUGGCCgccGGCGGGuCGgCGUAAUc -3' miRNA: 3'- gCCGGGCUGG---UCGCCC-GUgGCGUUAu -5' |
|||||||
19579 | 5' | -61.6 | NC_004686.1 | + | 37895 | 0.71 | 0.176172 |
Target: 5'- aCGGCCCGccuaucucagaacaaGCCAGCGGGC-UCGUc--- -3' miRNA: 3'- -GCCGGGC---------------UGGUCGCCCGuGGCGuuau -5' |
|||||||
19579 | 5' | -61.6 | NC_004686.1 | + | 26683 | 0.72 | 0.144857 |
Target: 5'- gCGGUUCGAUCGGCGGGUGCuCGCc--- -3' miRNA: 3'- -GCCGGGCUGGUCGCCCGUG-GCGuuau -5' |
|||||||
19579 | 5' | -61.6 | NC_004686.1 | + | 42204 | 0.74 | 0.110607 |
Target: 5'- aGGCCCGAa-GGCGGGagucgaACCGCAAa- -3' miRNA: 3'- gCCGGGCUggUCGCCCg-----UGGCGUUau -5' |
|||||||
19579 | 5' | -61.6 | NC_004686.1 | + | 14123 | 1.06 | 0.000352 |
Target: 5'- cCGGCCCGACCAGCGGGCACCGCAAUAg -3' miRNA: 3'- -GCCGGGCUGGUCGCCCGUGGCGUUAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home