miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19580 3' -60.5 NC_004686.1 + 10826 0.66 0.425582
Target:  5'- cGCCgCGgggguGCCgGCAACAaccucgaaugacCCGUCGGGGAg -3'
miRNA:   3'- -UGG-GC-----CGGgCGUUGU------------GGUAGUCCCUa -5'
19580 3' -60.5 NC_004686.1 + 44456 0.66 0.416332
Target:  5'- -aCCGGCgaacggauCCGCAaccACACCGUCGGGu-- -3'
miRNA:   3'- ugGGCCG--------GGCGU---UGUGGUAGUCCcua -5'
19580 3' -60.5 NC_004686.1 + 16876 0.66 0.398207
Target:  5'- --gCGGCCgGCAACACUAUUgAGGGc- -3'
miRNA:   3'- uggGCCGGgCGUUGUGGUAG-UCCCua -5'
19580 3' -60.5 NC_004686.1 + 21910 0.66 0.394644
Target:  5'- cGCCCGcGCCCGCgccgccgaggcgcAcccgcaagugcgucGCGCCGaCAGGGGUu -3'
miRNA:   3'- -UGGGC-CGGGCG-------------U--------------UGUGGUaGUCCCUA- -5'
19580 3' -60.5 NC_004686.1 + 4929 0.66 0.389337
Target:  5'- uGCCCGGCgUGUGGCAgaAggcUCAGGGAc -3'
miRNA:   3'- -UGGGCCGgGCGUUGUggU---AGUCCCUa -5'
19580 3' -60.5 NC_004686.1 + 976 0.67 0.380596
Target:  5'- -gCCGGCCUGCcGCGCaaugcUCAGGGu- -3'
miRNA:   3'- ugGGCCGGGCGuUGUGgu---AGUCCCua -5'
19580 3' -60.5 NC_004686.1 + 39796 0.67 0.380596
Target:  5'- cGCCUGGgCCagGACAUguUCAGGGAUg -3'
miRNA:   3'- -UGGGCCgGGcgUUGUGguAGUCCCUA- -5'
19580 3' -60.5 NC_004686.1 + 2954 0.68 0.293382
Target:  5'- cCCCGGCgucCUGCAACcCCAUCAuGGGu- -3'
miRNA:   3'- uGGGCCG---GGCGUUGuGGUAGU-CCCua -5'
19580 3' -60.5 NC_004686.1 + 43745 0.69 0.279307
Target:  5'- aACCUGGgCCGCcGCGCCAUCGGcgucGAa -3'
miRNA:   3'- -UGGGCCgGGCGuUGUGGUAGUCc---CUa -5'
19580 3' -60.5 NC_004686.1 + 37792 0.69 0.265774
Target:  5'- cCCCGGUCCGguACACC-UCGGaauuacGGAUg -3'
miRNA:   3'- uGGGCCGGGCguUGUGGuAGUC------CCUA- -5'
19580 3' -60.5 NC_004686.1 + 54867 0.69 0.252777
Target:  5'- cGCgCCGGCCCGcCAACcugaaACCGUCAucgaacacuGGGAc -3'
miRNA:   3'- -UG-GGCCGGGC-GUUG-----UGGUAGU---------CCCUa -5'
19580 3' -60.5 NC_004686.1 + 33568 0.72 0.162441
Target:  5'- uGCUCGGCCUGcCAGCGCagcCAGGGAc -3'
miRNA:   3'- -UGGGCCGGGC-GUUGUGguaGUCCCUa -5'
19580 3' -60.5 NC_004686.1 + 15150 1.05 0.000512
Target:  5'- aACCCGGCCCGCAACACCAUCAGGGAUg -3'
miRNA:   3'- -UGGGCCGGGCGUUGUGGUAGUCCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.