Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19581 | 3' | -50.2 | NC_004686.1 | + | 15251 | 1.12 | 0.002273 |
Target: 5'- gGUCAUCGAGGAAGUAGUGCCCUAACCc -3' miRNA: 3'- -CAGUAGCUCCUUCAUCACGGGAUUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 54646 | 0.73 | 0.62074 |
Target: 5'- uGUCGUCGGGGAAGgugaacguuggcagGGUGUCUUcgaacaacccGACCa -3' miRNA: 3'- -CAGUAGCUCCUUCa-------------UCACGGGA----------UUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 11267 | 0.68 | 0.866595 |
Target: 5'- aUCGUCGAGGAAcauc-GCCCgacccgAACCg -3' miRNA: 3'- cAGUAGCUCCUUcaucaCGGGa-----UUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 17334 | 0.68 | 0.874789 |
Target: 5'- -cCGUCGAGGAugcgcUAGggGCgCUGGCCa -3' miRNA: 3'- caGUAGCUCCUuc---AUCa-CGgGAUUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 8539 | 0.67 | 0.911604 |
Target: 5'- cUCAUCGAGGAAGU----CCC--ACCg -3' miRNA: 3'- cAGUAGCUCCUUCAucacGGGauUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 55663 | 0.66 | 0.930209 |
Target: 5'- cGUCGUCGAuGGAcaGGUAGUcagcgucgacgGUgUUGGCCa -3' miRNA: 3'- -CAGUAGCU-CCU--UCAUCA-----------CGgGAUUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 39815 | 0.66 | 0.930209 |
Target: 5'- cGUCGUCGAGcAGGcGGgccGCCUgGGCCa -3' miRNA: 3'- -CAGUAGCUCcUUCaUCa--CGGGaUUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 7618 | 0.66 | 0.930209 |
Target: 5'- cGUCuggGUCGGGGAAGUccacGG-GUCCUugcugguuuGACCa -3' miRNA: 3'- -CAG---UAGCUCCUUCA----UCaCGGGA---------UUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 41901 | 0.66 | 0.934719 |
Target: 5'- cUCGUCGaAGGAGGUGGaagGCCgggaaaucgugGGCCg -3' miRNA: 3'- cAGUAGC-UCCUUCAUCa--CGGga---------UUGG- -5' |
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19581 | 3' | -50.2 | NC_004686.1 | + | 41182 | 0.66 | 0.946151 |
Target: 5'- uGUCGUCGAaGAAGUGGUcacggaacaucuGCCUcAACg -3' miRNA: 3'- -CAGUAGCUcCUUCAUCA------------CGGGaUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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