Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19581 | 5' | -57.2 | NC_004686.1 | + | 56001 | 0.66 | 0.639105 |
Target: 5'- gCGGUCGauggauGUGCGGGGCggcagGCUGUUGAg -3' miRNA: 3'- gGCUAGUc-----CAUGCCCCG-----UGGCAGCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 56109 | 0.66 | 0.606835 |
Target: 5'- gCGGcCGGGUugGcGGGUGCCGggCGGg -3' miRNA: 3'- gGCUaGUCCAugC-CCCGUGGCa-GCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 53281 | 0.66 | 0.628342 |
Target: 5'- aCCGGUaacaacuaccgcCGuGUACGGGGuCACCGauUCGAUg -3' miRNA: 3'- -GGCUA------------GUcCAUGCCCC-GUGGC--AGCUA- -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 2369 | 0.66 | 0.628342 |
Target: 5'- uUGGUCuGGUGCuGGGGUggacggguaagGCUGUUGAUg -3' miRNA: 3'- gGCUAGuCCAUG-CCCCG-----------UGGCAGCUA- -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 12157 | 0.67 | 0.596108 |
Target: 5'- gCGGUCAGGccGCGGGGcCAgCGgCGGc -3' miRNA: 3'- gGCUAGUCCa-UGCCCC-GUgGCaGCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 43471 | 0.67 | 0.564137 |
Target: 5'- uUCGAacgCAGGUcuuCGcGGCGCUGUCGGUg -3' miRNA: 3'- -GGCUa--GUCCAu--GCcCCGUGGCAGCUA- -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 19892 | 0.69 | 0.471747 |
Target: 5'- gCCGAU--GGUGCGGGGCcuGgUGUCGGc -3' miRNA: 3'- -GGCUAguCCAUGCCCCG--UgGCAGCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 55504 | 0.69 | 0.461937 |
Target: 5'- gCCgGAUgAGGUACGcgaucGGCAUCGUCGGc -3' miRNA: 3'- -GG-CUAgUCCAUGCc----CCGUGGCAGCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 18109 | 0.71 | 0.35356 |
Target: 5'- aCGAUCAucaacacuuUGCGGGGCACgGUCGGg -3' miRNA: 3'- gGCUAGUcc-------AUGCCCCGUGgCAGCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 14900 | 0.72 | 0.321651 |
Target: 5'- cCCaGAUCGGGuccUugGGcGGCACgGUCGAc -3' miRNA: 3'- -GG-CUAGUCC---AugCC-CCGUGgCAGCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 12446 | 0.75 | 0.19904 |
Target: 5'- gCCGAugccacaUCAGGgcaAUGGGGCACCGcCGGg -3' miRNA: 3'- -GGCU-------AGUCCa--UGCCCCGUGGCaGCUa -5' |
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19581 | 5' | -57.2 | NC_004686.1 | + | 15217 | 1.08 | 0.000936 |
Target: 5'- gCCGAUCAGGUACGGGGCACCGUCGAUa -3' miRNA: 3'- -GGCUAGUCCAUGCCCCGUGGCAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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