miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19582 3' -55.3 NC_004686.1 + 40029 0.66 0.737487
Target:  5'- aGCGGaUCUGCGGUAUgugcGAcGuCCGGg -3'
miRNA:   3'- cUGCC-GGACGCCAUGaa--CUaCuGGCC- -5'
19582 3' -55.3 NC_004686.1 + 55278 0.66 0.736443
Target:  5'- cGAUGGaCUUGCGGUccuugcggAUUUGGUGggcgucggcggcuGCCGGu -3'
miRNA:   3'- -CUGCC-GGACGCCA--------UGAACUAC-------------UGGCC- -5'
19582 3' -55.3 NC_004686.1 + 25254 0.66 0.716428
Target:  5'- cGGCaGCCUcgacgGCGGU-UUUGAUGAUgGGg -3'
miRNA:   3'- -CUGcCGGA-----CGCCAuGAACUACUGgCC- -5'
19582 3' -55.3 NC_004686.1 + 9985 0.66 0.716428
Target:  5'- -gUGGCUgcagaaGCaGUACggGGUGACCGGu -3'
miRNA:   3'- cuGCCGGa-----CGcCAUGaaCUACUGGCC- -5'
19582 3' -55.3 NC_004686.1 + 14034 0.67 0.695041
Target:  5'- cGCGGacuaUUGCGGUGCccgcUGGUcgGGCCGGc -3'
miRNA:   3'- cUGCCg---GACGCCAUGa---ACUA--CUGGCC- -5'
19582 3' -55.3 NC_004686.1 + 18827 0.68 0.62978
Target:  5'- cGACGGCg-GCGGUGCgcgacGA-GACCGc -3'
miRNA:   3'- -CUGCCGgaCGCCAUGaa---CUaCUGGCc -5'
19582 3' -55.3 NC_004686.1 + 55038 0.68 0.618852
Target:  5'- aGGCGGCgCUGCGGUugaACUgGgcGucuCCGGu -3'
miRNA:   3'- -CUGCCG-GACGCCA---UGAaCuaCu--GGCC- -5'
19582 3' -55.3 NC_004686.1 + 20061 0.68 0.586173
Target:  5'- gGACGGCCUGCuGUccCUUGAgGACaCGa -3'
miRNA:   3'- -CUGCCGGACGcCAu-GAACUaCUG-GCc -5'
19582 3' -55.3 NC_004686.1 + 10836 0.69 0.522044
Target:  5'- gGGCGGCUUGCGccGCgggGGUG-CCGGc -3'
miRNA:   3'- -CUGCCGGACGCcaUGaa-CUACuGGCC- -5'
19582 3' -55.3 NC_004686.1 + 19414 0.7 0.480822
Target:  5'- -uCGcGCCggguggugGCGGUAauggUGGUGACCGGu -3'
miRNA:   3'- cuGC-CGGa-------CGCCAUga--ACUACUGGCC- -5'
19582 3' -55.3 NC_004686.1 + 25589 0.71 0.450972
Target:  5'- -cCGGCCUGCGGUAC---AUGGCgGa -3'
miRNA:   3'- cuGCCGGACGCCAUGaacUACUGgCc -5'
19582 3' -55.3 NC_004686.1 + 37017 0.72 0.376714
Target:  5'- uGACGGgCUcGCGGUGuugGGUGGCUGGg -3'
miRNA:   3'- -CUGCCgGA-CGCCAUgaaCUACUGGCC- -5'
19582 3' -55.3 NC_004686.1 + 42997 0.73 0.334678
Target:  5'- uGugGGCaUGCGGUGCUUGucaccgcugGGCCGa -3'
miRNA:   3'- -CugCCGgACGCCAUGAACua-------CUGGCc -5'
19582 3' -55.3 NC_004686.1 + 46086 0.74 0.288903
Target:  5'- aGACGGCCcggGCGGUGCUgguaacaccGUGAccCCGGg -3'
miRNA:   3'- -CUGCCGGa--CGCCAUGAac-------UACU--GGCC- -5'
19582 3' -55.3 NC_004686.1 + 15653 1.1 0.001007
Target:  5'- gGACGGCCUGCGGUACUUGAUGACCGGu -3'
miRNA:   3'- -CUGCCGGACGCCAUGAACUACUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.