miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19584 3' -57.9 NC_004686.1 + 52981 0.66 0.554594
Target:  5'- gGGCAGCAUCucCCAgcugaUCCugGACcGCa -3'
miRNA:   3'- gCCGUCGUGGcuGGU-----GGGugCUGuUG- -5'
19584 3' -57.9 NC_004686.1 + 2879 0.66 0.551423
Target:  5'- aCGGCAacaccuGCGCCGGCaCACCguaaacaugcucauCACGGuCGACc -3'
miRNA:   3'- -GCCGU------CGUGGCUG-GUGG--------------GUGCU-GUUG- -5'
19584 3' -57.9 NC_004686.1 + 55398 0.67 0.544048
Target:  5'- aGGC-GCACaccuGACCGCCgcggacaaaGCGGCAACc -3'
miRNA:   3'- gCCGuCGUGg---CUGGUGGg--------UGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 3937 0.67 0.544048
Target:  5'- gGGCAGUuucaacgguuCCG-CCACCCAccCGGcCAGCg -3'
miRNA:   3'- gCCGUCGu---------GGCuGGUGGGU--GCU-GUUG- -5'
19584 3' -57.9 NC_004686.1 + 26100 0.67 0.544048
Target:  5'- uGGCAGaACU--CCGgCCACGGCGACu -3'
miRNA:   3'- gCCGUCgUGGcuGGUgGGUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 11248 0.67 0.533569
Target:  5'- cCGGggaucgcacCGGCGCgGAUCGCCgCACG-CAACg -3'
miRNA:   3'- -GCC---------GUCGUGgCUGGUGG-GUGCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 28672 0.67 0.533569
Target:  5'- -cGCAGCAgaacgaugcgcCUGAgCCACCuCACGACGAa -3'
miRNA:   3'- gcCGUCGU-----------GGCU-GGUGG-GUGCUGUUg -5'
19584 3' -57.9 NC_004686.1 + 52275 0.67 0.523163
Target:  5'- aGGCAGCcagcguugcagAUCGGCC-CCCuCGGCuGCg -3'
miRNA:   3'- gCCGUCG-----------UGGCUGGuGGGuGCUGuUG- -5'
19584 3' -57.9 NC_004686.1 + 26194 0.67 0.523163
Target:  5'- aCGGCcGCcCCGACCucgcagGCCCAcuCGcCAACa -3'
miRNA:   3'- -GCCGuCGuGGCUGG------UGGGU--GCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 20357 0.67 0.512835
Target:  5'- gGGCGGUgcgugGCCGGCaUAUUCGCGACAu- -3'
miRNA:   3'- gCCGUCG-----UGGCUG-GUGGGUGCUGUug -5'
19584 3' -57.9 NC_004686.1 + 54592 0.67 0.512835
Target:  5'- uCGGCuugguGCACauCGACUgcgACCUguACGACAGCa -3'
miRNA:   3'- -GCCGu----CGUG--GCUGG---UGGG--UGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 22844 0.67 0.512835
Target:  5'- uGGUGG-GCUGACCACCggugacCGCGAUAGCc -3'
miRNA:   3'- gCCGUCgUGGCUGGUGG------GUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 41373 0.67 0.512835
Target:  5'- gGGCAGCGCCG-CUgaucacaaugugACCCA-GugGGCu -3'
miRNA:   3'- gCCGUCGUGGCuGG------------UGGGUgCugUUG- -5'
19584 3' -57.9 NC_004686.1 + 9261 0.67 0.512835
Target:  5'- cCGGUGGCuaacggaacugaACUGGCCgucGCCUACGuCAGCa -3'
miRNA:   3'- -GCCGUCG------------UGGCUGG---UGGGUGCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 20516 0.67 0.511807
Target:  5'- gGGCGGgcauuuuCGCCGucGCCGgCCACGACGu- -3'
miRNA:   3'- gCCGUC-------GUGGC--UGGUgGGUGCUGUug -5'
19584 3' -57.9 NC_004686.1 + 31683 0.67 0.502592
Target:  5'- -cGCAGCACCGucGCCGCcguaugCCGCGccgaauGCAACg -3'
miRNA:   3'- gcCGUCGUGGC--UGGUG------GGUGC------UGUUG- -5'
19584 3' -57.9 NC_004686.1 + 12096 0.67 0.502592
Target:  5'- gCGGCuucuGCugCGGCUACC-GCGGCuuCg -3'
miRNA:   3'- -GCCGu---CGugGCUGGUGGgUGCUGuuG- -5'
19584 3' -57.9 NC_004686.1 + 21835 0.67 0.502592
Target:  5'- uCGGCGGCGCgGG-CGCggGCGGCGGCu -3'
miRNA:   3'- -GCCGUCGUGgCUgGUGggUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 56139 0.67 0.502592
Target:  5'- cCGGUcgcgGGUGCCGaACCGCCa--GGCGACg -3'
miRNA:   3'- -GCCG----UCGUGGC-UGGUGGgugCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 14600 0.67 0.49852
Target:  5'- aCGGCGGCACCGcauuugacggacugGcCCGCaCCGucgccgaguucgcCGACGACu -3'
miRNA:   3'- -GCCGUCGUGGC--------------U-GGUG-GGU-------------GCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.