Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19586 | 3' | -53.5 | NC_004686.1 | + | 42455 | 0.66 | 0.826979 |
Target: 5'- --gGUAGGuuucccguucuccaUCGCCACcugAUCAgcaccACGGGCGa -3' miRNA: 3'- gcaCAUCC--------------AGCGGUG---UAGU-----UGUCCGC- -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 53298 | 0.66 | 0.817714 |
Target: 5'- cCGUGUacgGGGUCaccgauucgaugcgGCCACGcgAACGGGCc -3' miRNA: 3'- -GCACA---UCCAG--------------CGGUGUagUUGUCCGc -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 40688 | 0.66 | 0.820515 |
Target: 5'- aCGUGgcGG-CGUCGCAaccgguguccCAACGGGCa -3' miRNA: 3'- -GCACauCCaGCGGUGUa---------GUUGUCCGc -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 29473 | 0.66 | 0.811111 |
Target: 5'- ----cAGGUcCGCCACAUCcacaacAGCuGGCGg -3' miRNA: 3'- gcacaUCCA-GCGGUGUAG------UUGuCCGC- -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 15685 | 0.67 | 0.740548 |
Target: 5'- gGUGgcccGGcugaCGCCGCAgCAGCAGGCc -3' miRNA: 3'- gCACau--CCa---GCGGUGUaGUUGUCCGc -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 5051 | 0.67 | 0.751056 |
Target: 5'- -cUG-AGGcUCGgC-CAUCGACAGGCGg -3' miRNA: 3'- gcACaUCC-AGCgGuGUAGUUGUCCGC- -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 45951 | 0.69 | 0.642366 |
Target: 5'- uGUGUGGGUgGagcggggaugaUCACA-CAACAGGCa -3' miRNA: 3'- gCACAUCCAgC-----------GGUGUaGUUGUCCGc -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 53504 | 0.69 | 0.653459 |
Target: 5'- gGUGaGGGUCGCC-CAagAcCAGGCa -3' miRNA: 3'- gCACaUCCAGCGGuGUagUuGUCCGc -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 19798 | 0.71 | 0.532497 |
Target: 5'- gGUGgAGGUCGCCACcg-AugAGGUGg -3' miRNA: 3'- gCACaUCCAGCGGUGuagUugUCCGC- -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 21700 | 0.74 | 0.392442 |
Target: 5'- uCGUGgGGGugaugaccuuguUCGCCACAUCAaccacaagcGCAGGCu -3' miRNA: 3'- -GCACaUCC------------AGCGGUGUAGU---------UGUCCGc -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 49397 | 0.76 | 0.27157 |
Target: 5'- aGUGUuGaGUCGCCACGUCA--AGGCGu -3' miRNA: 3'- gCACAuC-CAGCGGUGUAGUugUCCGC- -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 39830 | 0.84 | 0.090392 |
Target: 5'- cCGUGUAGGaggCGCCGuCGUCgAGCAGGCGg -3' miRNA: 3'- -GCACAUCCa--GCGGU-GUAG-UUGUCCGC- -5' |
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19586 | 3' | -53.5 | NC_004686.1 | + | 17931 | 1.08 | 0.001761 |
Target: 5'- gCGUGUAGGUCGCCACAUCAACAGGCGc -3' miRNA: 3'- -GCACAUCCAGCGGUGUAGUUGUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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