miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19586 5' -56.7 NC_004686.1 + 16437 0.66 0.626639
Target:  5'- -aCGCC-CGAUGCuGAAUCGCCa--- -3'
miRNA:   3'- uaGCGGcGCUACGcCUUAGUGGacgu -5'
19586 5' -56.7 NC_004686.1 + 38412 0.66 0.609002
Target:  5'- cAUCGCCGCGGgcaucaucggcccCGGAcUCGCC-GCAc -3'
miRNA:   3'- -UAGCGGCGCUac-----------GCCUuAGUGGaCGU- -5'
19586 5' -56.7 NC_004686.1 + 53295 0.66 0.6035
Target:  5'- -cCGCCGUGua-CGGggUCACCgauucgaUGCGg -3'
miRNA:   3'- uaGCGGCGCuacGCCuuAGUGG-------ACGU- -5'
19586 5' -56.7 NC_004686.1 + 14586 0.66 0.582655
Target:  5'- -gCGCCGCGccacgGCuccGGAUCGCCUGgCAg -3'
miRNA:   3'- uaGCGGCGCua---CGc--CUUAGUGGAC-GU- -5'
19586 5' -56.7 NC_004686.1 + 30896 0.67 0.560875
Target:  5'- cGUUGCCGUgGGUGUGGAcgUACaaGCAu -3'
miRNA:   3'- -UAGCGGCG-CUACGCCUuaGUGgaCGU- -5'
19586 5' -56.7 NC_004686.1 + 6027 0.67 0.560875
Target:  5'- cAUCGCCGCGaAUGCG--AUgGCC-GCAg -3'
miRNA:   3'- -UAGCGGCGC-UACGCcuUAgUGGaCGU- -5'
19586 5' -56.7 NC_004686.1 + 21539 0.67 0.550068
Target:  5'- gAUUGCUGUgGAUGUGGAugccacgccGUUGCCUGCc -3'
miRNA:   3'- -UAGCGGCG-CUACGCCU---------UAGUGGACGu -5'
19586 5' -56.7 NC_004686.1 + 31948 0.67 0.528655
Target:  5'- --aGCCGU--UGCGGGAUCugCUGgCGg -3'
miRNA:   3'- uagCGGCGcuACGCCUUAGugGAC-GU- -5'
19586 5' -56.7 NC_004686.1 + 47545 0.68 0.497143
Target:  5'- -aUGcCCGUGAUGCGGAGUuggagCGCCgGCu -3'
miRNA:   3'- uaGC-GGCGCUACGCCUUA-----GUGGaCGu -5'
19586 5' -56.7 NC_004686.1 + 6237 0.69 0.427234
Target:  5'- -gCGCCaGCGcgGCGGGuUCaACCUGUg -3'
miRNA:   3'- uaGCGG-CGCuaCGCCUuAG-UGGACGu -5'
19586 5' -56.7 NC_004686.1 + 28793 0.7 0.381019
Target:  5'- uGUCGCCGCGGUGUuguuGGuGUU-CCUGCu -3'
miRNA:   3'- -UAGCGGCGCUACG----CCuUAGuGGACGu -5'
19586 5' -56.7 NC_004686.1 + 38652 0.71 0.346529
Target:  5'- cGUCGCCGC--UGCGGAAUCgguguauuGCCcGCGc -3'
miRNA:   3'- -UAGCGGCGcuACGCCUUAG--------UGGaCGU- -5'
19586 5' -56.7 NC_004686.1 + 5102 0.71 0.338263
Target:  5'- cUCGCCGCGAgGCGGGgcggucaggGUCAUguaCUGCu -3'
miRNA:   3'- uAGCGGCGCUaCGCCU---------UAGUG---GACGu -5'
19586 5' -56.7 NC_004686.1 + 53578 0.71 0.306646
Target:  5'- cUUGCCGCGGUGaCGGGGguggaguuguUCACCcugGCAg -3'
miRNA:   3'- uAGCGGCGCUAC-GCCUU----------AGUGGa--CGU- -5'
19586 5' -56.7 NC_004686.1 + 17828 0.75 0.19221
Target:  5'- cAUCGCgGCGAUGUGGuggaugCGCCUGUu -3'
miRNA:   3'- -UAGCGgCGCUACGCCuua---GUGGACGu -5'
19586 5' -56.7 NC_004686.1 + 17895 1.07 0.000937
Target:  5'- cAUCGCCGCGAUGCGGAAUCACCUGCAa -3'
miRNA:   3'- -UAGCGGCGCUACGCCUUAGUGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.