miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19587 3' -54.9 NC_004686.1 + 9246 0.66 0.771625
Target:  5'- uUCGGCGAccgaucUCACGGCCgGCGgCUUGu- -3'
miRNA:   3'- -GGCUGCU------AGUGCUGGaCGUgGAGCuu -5'
19587 3' -54.9 NC_004686.1 + 55473 0.66 0.761506
Target:  5'- gCGGCGGUCAgGugU-GCGCCUCc-- -3'
miRNA:   3'- gGCUGCUAGUgCugGaCGUGGAGcuu -5'
19587 3' -54.9 NC_004686.1 + 15919 0.66 0.761506
Target:  5'- gUCGGCGAaCGacUGACCUGCgGCCaguUCGAAg -3'
miRNA:   3'- -GGCUGCUaGU--GCUGGACG-UGG---AGCUU- -5'
19587 3' -54.9 NC_004686.1 + 44351 0.66 0.751255
Target:  5'- aCGAUcAUCGCGG-CUGCACC-CGAc -3'
miRNA:   3'- gGCUGcUAGUGCUgGACGUGGaGCUu -5'
19587 3' -54.9 NC_004686.1 + 22699 0.66 0.740885
Target:  5'- aCCGGUGAUgGCGAUCUGC-CCggCGGu -3'
miRNA:   3'- -GGCUGCUAgUGCUGGACGuGGa-GCUu -5'
19587 3' -54.9 NC_004686.1 + 578 0.66 0.740885
Target:  5'- -aGACGGUaACGaAUCUGCGCCUCc-- -3'
miRNA:   3'- ggCUGCUAgUGC-UGGACGUGGAGcuu -5'
19587 3' -54.9 NC_004686.1 + 49622 0.66 0.730405
Target:  5'- cCCaGCGAUCACGuuCUGgGCUUCGc- -3'
miRNA:   3'- -GGcUGCUAGUGCugGACgUGGAGCuu -5'
19587 3' -54.9 NC_004686.1 + 6659 0.67 0.709165
Target:  5'- cUCGACGGggccaCACGAUgUGaucgACCUCGAAg -3'
miRNA:   3'- -GGCUGCUa----GUGCUGgACg---UGGAGCUU- -5'
19587 3' -54.9 NC_004686.1 + 24586 0.69 0.578412
Target:  5'- aCUGACGAgUugGGCCgcagGCACCugaUCGAc -3'
miRNA:   3'- -GGCUGCUaGugCUGGa---CGUGG---AGCUu -5'
19587 3' -54.9 NC_004686.1 + 26897 0.71 0.453417
Target:  5'- cUCGACGA-CAgUGACCUGUucACCUCGGc -3'
miRNA:   3'- -GGCUGCUaGU-GCUGGACG--UGGAGCUu -5'
19587 3' -54.9 NC_004686.1 + 19936 0.74 0.328357
Target:  5'- gCGACGAUCugguCGAUCUGCGCCgUCa-- -3'
miRNA:   3'- gGCUGCUAGu---GCUGGACGUGG-AGcuu -5'
19587 3' -54.9 NC_004686.1 + 12856 0.75 0.290315
Target:  5'- cCUGAUGAgucaucgcuUCGCGGCgCUGCACCUuCGAAa -3'
miRNA:   3'- -GGCUGCU---------AGUGCUG-GACGUGGA-GCUU- -5'
19587 3' -54.9 NC_004686.1 + 18808 1.08 0.001512
Target:  5'- cCCGACGAUCACGACCUGCACCUCGAAc -3'
miRNA:   3'- -GGCUGCUAGUGCUGGACGUGGAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.