miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19588 5' -54.8 NC_004686.1 + 50620 0.66 0.797665
Target:  5'- -aGCCGCCGCGGggGauuaccaggCGG-CUCa -3'
miRNA:   3'- ggUGGUGGCGUCuuCcaa------GCCuGAGc -5'
19588 5' -54.8 NC_004686.1 + 3736 0.66 0.797665
Target:  5'- gCCGCCAUgGCGGcGGcggCGGACUgGu -3'
miRNA:   3'- -GGUGGUGgCGUCuUCcaaGCCUGAgC- -5'
19588 5' -54.8 NC_004686.1 + 5031 0.66 0.796708
Target:  5'- cCCGCC-UCGCGGcGAGGUcgUCGGugaagguGCUCa -3'
miRNA:   3'- -GGUGGuGGCGUC-UUCCA--AGCC-------UGAGc -5'
19588 5' -54.8 NC_004686.1 + 33744 0.66 0.788017
Target:  5'- gCCuugUCGCgaGCAGAGaGUUCGGugUCGa -3'
miRNA:   3'- -GGu--GGUGg-CGUCUUcCAAGCCugAGC- -5'
19588 5' -54.8 NC_004686.1 + 38653 0.66 0.77821
Target:  5'- gUCGCCGCUGCGGAA---UCGGugUa- -3'
miRNA:   3'- -GGUGGUGGCGUCUUccaAGCCugAgc -5'
19588 5' -54.8 NC_004686.1 + 16998 0.66 0.777221
Target:  5'- -gGCCGCCgGCGGGucggcguaaucauGGGUgCGGACUgGu -3'
miRNA:   3'- ggUGGUGG-CGUCU-------------UCCAaGCCUGAgC- -5'
19588 5' -54.8 NC_004686.1 + 2414 0.66 0.768255
Target:  5'- cCCGCCGCUGCaaccuGGAAgGGUUCGuguGGC-CGg -3'
miRNA:   3'- -GGUGGUGGCG-----UCUU-CCAAGC---CUGaGC- -5'
19588 5' -54.8 NC_004686.1 + 23940 0.67 0.737612
Target:  5'- aCGCgGCCGac-AAGGcaUCGGGCUCGg -3'
miRNA:   3'- gGUGgUGGCgucUUCCa-AGCCUGAGC- -5'
19588 5' -54.8 NC_004686.1 + 15058 0.67 0.727175
Target:  5'- aCACCAUCGCAucccuGAuGGUguugCGGGC-CGg -3'
miRNA:   3'- gGUGGUGGCGU-----CUuCCAa---GCCUGaGC- -5'
19588 5' -54.8 NC_004686.1 + 33746 0.67 0.716645
Target:  5'- gCACCGCaugaaGCGGAAGGccaggaGGugUCa -3'
miRNA:   3'- gGUGGUGg----CGUCUUCCaag---CCugAGc -5'
19588 5' -54.8 NC_004686.1 + 39467 0.67 0.695352
Target:  5'- gCGCauuuCCGCGGccAGGGUU-GGACUCGu -3'
miRNA:   3'- gGUGgu--GGCGUC--UUCCAAgCCUGAGC- -5'
19588 5' -54.8 NC_004686.1 + 39196 0.68 0.68461
Target:  5'- cUCGCCACCGCAGuggcugcAGGUcuuUCGGGa--- -3'
miRNA:   3'- -GGUGGUGGCGUCu------UCCA---AGCCUgagc -5'
19588 5' -54.8 NC_004686.1 + 14027 0.68 0.68461
Target:  5'- aCAUCACCGCGGAcuauugcGGUgcccgcuggUCGGGC-CGg -3'
miRNA:   3'- gGUGGUGGCGUCUu------CCA---------AGCCUGaGC- -5'
19588 5' -54.8 NC_004686.1 + 8039 0.68 0.652132
Target:  5'- gCCGCUGCCGCGGAAGucGUUCGuGgUCc -3'
miRNA:   3'- -GGUGGUGGCGUCUUC--CAAGCcUgAGc -5'
19588 5' -54.8 NC_004686.1 + 47926 0.69 0.619491
Target:  5'- aCCGgCAa-GUGGAAGGUUCGGuugGCUCGc -3'
miRNA:   3'- -GGUgGUggCGUCUUCCAAGCC---UGAGC- -5'
19588 5' -54.8 NC_004686.1 + 4582 0.69 0.597768
Target:  5'- aCCGCCAaaGCGGAAGcGUUgCGGcUUCGc -3'
miRNA:   3'- -GGUGGUggCGUCUUC-CAA-GCCuGAGC- -5'
19588 5' -54.8 NC_004686.1 + 13567 0.69 0.597768
Target:  5'- cCCGCCAUCGguGggGGUgauguugCGGcACg-- -3'
miRNA:   3'- -GGUGGUGGCguCuuCCAa------GCC-UGagc -5'
19588 5' -54.8 NC_004686.1 + 47191 0.69 0.586945
Target:  5'- cUCACCGCCgGCGaagcGAAGGUccUCGGAugggcuggcCUCGg -3'
miRNA:   3'- -GGUGGUGG-CGU----CUUCCA--AGCCU---------GAGC- -5'
19588 5' -54.8 NC_004686.1 + 15745 0.7 0.554731
Target:  5'- gCCACCGCauCGCGGGcAGGaUUCGG-CUCc -3'
miRNA:   3'- -GGUGGUG--GCGUCU-UCC-AAGCCuGAGc -5'
19588 5' -54.8 NC_004686.1 + 38410 0.7 0.544103
Target:  5'- cUCAUCGCCGCGGGcaucaucGGcccCGGACUCGc -3'
miRNA:   3'- -GGUGGUGGCGUCUu------CCaa-GCCUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.