Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 3527 | 0.66 | 0.390358 |
Target: 5'- cAUGGCCGacaaacGCCGCGUuCaGGGcCGcGGCAc -3' miRNA: 3'- -UACUGGU------UGGCGCAuGcCCC-GC-CCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 5106 | 0.76 | 0.092866 |
Target: 5'- -cGACCucGCCGCGagGCGGGGCGGuCAg -3' miRNA: 3'- uaCUGGu-UGGCGCa-UGCCCCGCCcGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 5626 | 0.67 | 0.381668 |
Target: 5'- gGUGACUucuCCGCGUuccguUGGGGUGuGCAg -3' miRNA: 3'- -UACUGGuu-GGCGCAu----GCCCCGCcCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 12109 | 0.67 | 0.36468 |
Target: 5'- -cGGCU-ACCGCGgcuuCGGcugccgcaacGGCGGGCAg -3' miRNA: 3'- uaCUGGuUGGCGCau--GCC----------CCGCCCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 14820 | 0.67 | 0.373109 |
Target: 5'- --uGCCGguacACCGCGUACGGGuguuccuuGUGGGUc -3' miRNA: 3'- uacUGGU----UGGCGCAUGCCC--------CGCCCGu -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 17247 | 0.66 | 0.386866 |
Target: 5'- uUGGCCGcgcAUCGCGgcuucccacuccgACuGaGGGCGGGCAg -3' miRNA: 3'- uACUGGU---UGGCGCa------------UG-C-CCCGCCCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 17540 | 0.67 | 0.37226 |
Target: 5'- cUGGCgCAGCUGUuuggccaGU-UGGGGCGGGCu -3' miRNA: 3'- uACUG-GUUGGCG-------CAuGCCCCGCCCGu -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 19185 | 0.67 | 0.381668 |
Target: 5'- gGUGcGCCGGgUGCuggugGUACGGGuGUGGGCGg -3' miRNA: 3'- -UAC-UGGUUgGCG-----CAUGCCC-CGCCCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 20534 | 1.06 | 0.000482 |
Target: 5'- cAUGACCAACCGCGUACGGGGCGGGCAu -3' miRNA: 3'- -UACUGGUUGGCGCAUGCCCCGCCCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 21827 | 0.66 | 0.426378 |
Target: 5'- gGUGcGCCu-CgGCGgcGCGGGcGCGGGCGg -3' miRNA: 3'- -UAC-UGGuuGgCGCa-UGCCC-CGCCCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 22828 | 0.69 | 0.280844 |
Target: 5'- gGUGACCGcgauaGCCGCGgcgcCGGggguuaGGCGGGUg -3' miRNA: 3'- -UACUGGU-----UGGCGCau--GCC------CCGCCCGu -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 24252 | 0.68 | 0.324545 |
Target: 5'- -gGGCCu-CC-UGUugGGGGUGGGCc -3' miRNA: 3'- uaCUGGuuGGcGCAugCCCCGCCCGu -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 41949 | 0.68 | 0.309437 |
Target: 5'- -cGGCCAugggacagcGCCG-GUugGGGGaCGGGUu -3' miRNA: 3'- uaCUGGU---------UGGCgCAugCCCC-GCCCGu -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 50163 | 0.68 | 0.294156 |
Target: 5'- --cACCAccuccacGCCGUGUGgaucaGGGGUGGGCGg -3' miRNA: 3'- uacUGGU-------UGGCGCAUg----CCCCGCCCGU- -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 53278 | 0.68 | 0.324545 |
Target: 5'- cUGACCGguaacaacuaccGCCGUGUACGGGGUcaccgauucgauGcGGCc -3' miRNA: 3'- uACUGGU------------UGGCGCAUGCCCCG------------C-CCGu -5' |
|||||||
19590 | 3' | -60.8 | NC_004686.1 | + | 56113 | 0.7 | 0.230015 |
Target: 5'- -cGACgCGGCCGgGUugGCGGGuGCcGGGCGg -3' miRNA: 3'- uaCUG-GUUGGCgCA--UGCCC-CG-CCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home