Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19591 | 5' | -54.8 | NC_004686.1 | + | 13579 | 0.68 | 0.629917 |
Target: 5'- -gUCgAUCGUCAaccCGCCAUCGguggGGGUGa -3' miRNA: 3'- caAGgUAGCGGU---GUGGUGGCa---UCCAC- -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 16983 | 0.66 | 0.706815 |
Target: 5'- aUUCCucacggGCCugGCCGCCGgcGGg- -3' miRNA: 3'- cAAGGuag---CGGugUGGUGGCauCCac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 21174 | 1.09 | 0.001045 |
Target: 5'- cGUUCCAUCGCCACACCACCGUAGGUGg -3' miRNA: 3'- -CAAGGUAGCGGUGUGGUGGCAUCCAC- -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 21909 | 0.67 | 0.674078 |
Target: 5'- --gCCcgCGcCCGCGCCGCCG-AGGc- -3' miRNA: 3'- caaGGuaGC-GGUGUGGUGGCaUCCac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 21969 | 0.68 | 0.618855 |
Target: 5'- --gCCAcCGCCACcgccGCCGCCGUAGcGa- -3' miRNA: 3'- caaGGUaGCGGUG----UGGUGGCAUC-Cac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 22163 | 0.66 | 0.738887 |
Target: 5'- --cCCuuuUUGCCGCccugGCCGCCGUucgcGGUGa -3' miRNA: 3'- caaGGu--AGCGGUG----UGGUGGCAu---CCAC- -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 22376 | 0.66 | 0.728289 |
Target: 5'- gGUUCCGUUGUUGcCGCCGCUGauGGUGu -3' miRNA: 3'- -CAAGGUAGCGGU-GUGGUGGCauCCAC- -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 25625 | 0.66 | 0.743096 |
Target: 5'- -aUCCGUCGUggagcugggaccgaaCACGCUACCG-AGGa- -3' miRNA: 3'- caAGGUAGCG---------------GUGUGGUGGCaUCCac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 28052 | 0.67 | 0.685045 |
Target: 5'- -gUCCGUCGgCAUcuCCGCCGUAGa-- -3' miRNA: 3'- caAGGUAGCgGUGu-GGUGGCAUCcac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 33775 | 0.68 | 0.629917 |
Target: 5'- aGUUCCGUCG-UACGCCcacGCCGgcGGg- -3' miRNA: 3'- -CAAGGUAGCgGUGUGG---UGGCauCCac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 38074 | 0.67 | 0.674078 |
Target: 5'- cGUUCCugcCGCCGCACCAU--UGGGa- -3' miRNA: 3'- -CAAGGua-GCGGUGUGGUGgcAUCCac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 39846 | 0.68 | 0.596778 |
Target: 5'- --aCCGUCGCCGCGgCGuCCGUguAGGa- -3' miRNA: 3'- caaGGUAGCGGUGUgGU-GGCA--UCCac -5' |
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19591 | 5' | -54.8 | NC_004686.1 | + | 48976 | 0.68 | 0.629917 |
Target: 5'- aUUCCGUgCGCCgu-CCGCCGUGGcGUa -3' miRNA: 3'- cAAGGUA-GCGGuguGGUGGCAUC-CAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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