Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 55333 | 0.66 | 0.996767 |
|
Target: 5'- ---cUCGUCGUAUUgGCCGAUGAggUUGa -3' miRNA: 3'- aauuAGCAGCAUGAgUGGUUGUU--GAC- -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 34088 | 0.66 | 0.996767 |
|
Target: 5'- cUGAUUGaCGgcaucaagGC-CGCCAACGGCUGg -3' miRNA: 3'- aAUUAGCaGCa-------UGaGUGGUUGUUGAC- -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 54430 | 0.66 | 0.996122 |
|
Target: 5'- -cGGUCGUCGgguucgACUCAuuCCAGgGGCUc -3' miRNA: 3'- aaUUAGCAGCa-----UGAGU--GGUUgUUGAc -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 12424 | 0.66 | 0.994513 |
|
Target: 5'- -cGGUCGUCGUgGC-CGCCGGCAu--- -3' miRNA: 3'- aaUUAGCAGCA-UGaGUGGUUGUugac -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 28281 | 0.67 | 0.988081 |
|
Target: 5'- ----gCGUCGUGCUCAUCGugGGauucCUGu -3' miRNA: 3'- aauuaGCAGCAUGAGUGGUugUU----GAC- -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 15846 | 0.68 | 0.976939 |
|
Target: 5'- -aGGUCaGUCGU--UCGCCGACGACa- -3' miRNA: 3'- aaUUAG-CAGCAugAGUGGUUGUUGac -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 39768 | 0.68 | 0.976939 |
|
Target: 5'- -gGGUCGUgGgcUUCGCCG-CGGCUGa -3' miRNA: 3'- aaUUAGCAgCauGAGUGGUuGUUGAC- -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 49862 | 0.69 | 0.970812 |
|
Target: 5'- -cAGUCGgaaccCG-ACUCGCCGGCGACg- -3' miRNA: 3'- aaUUAGCa----GCaUGAGUGGUUGUUGac -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 27566 | 0.69 | 0.959558 |
|
Target: 5'- gUGAUCGUUGgGCggagaaCGCCAACGACg- -3' miRNA: 3'- aAUUAGCAGCaUGa-----GUGGUUGUUGac -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 2641 | 0.74 | 0.782838 |
|
Target: 5'- ---cUCGUCGUcCUCACCAACAGu-- -3' miRNA: 3'- aauuAGCAGCAuGAGUGGUUGUUgac -5' |
|||||||
| 19592 | 3' | -45.9 | NC_004686.1 | + | 21528 | 1.08 | 0.011249 |
|
Target: 5'- cUUAAUCGUCGUACUCACCAACAACUGa -3' miRNA: 3'- -AAUUAGCAGCAUGAGUGGUUGUUGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home