miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19593 5' -64.6 NC_004686.1 + 54989 0.67 0.242731
Target:  5'- gCGCCACCGCacaaACCGaCGCUGaCGUu- -3'
miRNA:   3'- -GCGGUGGCGg---UGGCgGCGGCgGCAuc -5'
19593 5' -64.6 NC_004686.1 + 12110 0.67 0.242731
Target:  5'- gGCUACCGCgGCUucgGCUGCCGCaaCGgcGg -3'
miRNA:   3'- gCGGUGGCGgUGG---CGGCGGCG--GCauC- -5'
19593 5' -64.6 NC_004686.1 + 38402 0.68 0.231188
Target:  5'- uGCCGCUGCuCAUCGCCGCgGgCa--- -3'
miRNA:   3'- gCGGUGGCG-GUGGCGGCGgCgGcauc -5'
19593 5' -64.6 NC_004686.1 + 24521 0.68 0.228936
Target:  5'- gGCCGCCGCCGCagcgcuucacgcagCGCUucacggucuucauGCCGUCGUc- -3'
miRNA:   3'- gCGGUGGCGGUG--------------GCGG-------------CGGCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 11112 0.68 0.225593
Target:  5'- gGCCGggGCCACCGaUCGgaCCGCCGUGa -3'
miRNA:   3'- gCGGUggCGGUGGC-GGC--GGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 35937 0.68 0.223937
Target:  5'- aGUgACCGUCugcuuuaugacaagGCUGCUGCCGCUGUGc -3'
miRNA:   3'- gCGgUGGCGG--------------UGGCGGCGGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 9590 0.68 0.220112
Target:  5'- uGCUGCagguGCUACUGCCGCUGUCGg-- -3'
miRNA:   3'- gCGGUGg---CGGUGGCGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 47909 0.68 0.214746
Target:  5'- uCGCCGCCGCUcaugacauCCGCCcCCGCgccaaagcgccCGUAGc -3'
miRNA:   3'- -GCGGUGGCGGu-------GGCGGcGGCG-----------GCAUC- -5'
19593 5' -64.6 NC_004686.1 + 29956 0.68 0.209492
Target:  5'- aGCCGCCGCCACa-CCGaCC-CCGgcugAGa -3'
miRNA:   3'- gCGGUGGCGGUGgcGGC-GGcGGCa---UC- -5'
19593 5' -64.6 NC_004686.1 + 22402 0.69 0.199317
Target:  5'- cCGCCauuaccggcgggGCCGUCGCUgguuccguuguuGCCGCCGCUGaUGGu -3'
miRNA:   3'- -GCGG------------UGGCGGUGG------------CGGCGGCGGC-AUC- -5'
19593 5' -64.6 NC_004686.1 + 41349 0.69 0.194393
Target:  5'- uCGCCGCUGCUcuucUCGCUGCUGCUGcGGa -3'
miRNA:   3'- -GCGGUGGCGGu---GGCGGCGGCGGCaUC- -5'
19593 5' -64.6 NC_004686.1 + 39849 0.69 0.18815
Target:  5'- -cCCACCGUCGCCGCgGCguccguguaggaggCGCCGUc- -3'
miRNA:   3'- gcGGUGGCGGUGGCGgCG--------------GCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 24425 0.69 0.180254
Target:  5'- -uCCACacggCGCCuuguCCGCCGCUGCCGgUGGc -3'
miRNA:   3'- gcGGUG----GCGGu---GGCGGCGGCGGC-AUC- -5'
19593 5' -64.6 NC_004686.1 + 22187 0.69 0.177537
Target:  5'- gCGCCACUgcucgacgaguugguGCCcuuuuuGCCGCCcugGCCGCCGUu- -3'
miRNA:   3'- -GCGGUGG---------------CGG------UGGCGG---CGGCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 48988 0.69 0.175747
Target:  5'- gGCgGCgGCCAgauuccgugCGCCGuCCGCCGUGGc -3'
miRNA:   3'- gCGgUGgCGGUg--------GCGGC-GGCGGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 31196 0.69 0.171341
Target:  5'- gCGCCAUuucgUGCgGCCGUCGUCGCUGcGGg -3'
miRNA:   3'- -GCGGUG----GCGgUGGCGGCGGCGGCaUC- -5'
19593 5' -64.6 NC_004686.1 + 25233 0.69 0.171341
Target:  5'- -uCCACUGaUCGCCGCCGCUGCUGc-- -3'
miRNA:   3'- gcGGUGGC-GGUGGCGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 12197 0.7 0.167034
Target:  5'- cCGCCGuuGCggcaGCCGaaGCCGCgGUAGc -3'
miRNA:   3'- -GCGGUggCGg---UGGCggCGGCGgCAUC- -5'
19593 5' -64.6 NC_004686.1 + 7197 0.7 0.162824
Target:  5'- aCGCCAgCGUCcUUGUgGCCGCCGUGc -3'
miRNA:   3'- -GCGGUgGCGGuGGCGgCGGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 49956 0.7 0.15469
Target:  5'- uCGCCGCgGCCuuCGUCGCCGgCGa-- -3'
miRNA:   3'- -GCGGUGgCGGugGCGGCGGCgGCauc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.