miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19594 3' -55.2 NC_004686.1 + 21211 0.66 0.703667
Target:  5'- -uUGUGG-UGUcGGUCAgcagCGGUGCCuGGg -3'
miRNA:   3'- cuACGCCaACA-UCGGUa---GCCACGG-CC- -5'
19594 3' -55.2 NC_004686.1 + 26457 0.67 0.692872
Target:  5'- --gGCGGggucGUAGCCcUUGGgcagGUCGGg -3'
miRNA:   3'- cuaCGCCaa--CAUCGGuAGCCa---CGGCC- -5'
19594 3' -55.2 NC_004686.1 + 3428 0.67 0.692872
Target:  5'- uGAUGCGGguaUGaAGCaguuggcggCGGUGCCGu -3'
miRNA:   3'- -CUACGCCa--ACaUCGgua------GCCACGGCc -5'
19594 3' -55.2 NC_004686.1 + 12560 0.67 0.682018
Target:  5'- aGUGCGGggGUAGgcgcccccggucCCggCGGUGCCc- -3'
miRNA:   3'- cUACGCCaaCAUC------------GGuaGCCACGGcc -5'
19594 3' -55.2 NC_004686.1 + 7092 0.67 0.682018
Target:  5'- -uUGCGGUgucgAGCCGgcagGGUGCaCGGc -3'
miRNA:   3'- cuACGCCAaca-UCGGUag--CCACG-GCC- -5'
19594 3' -55.2 NC_004686.1 + 55895 0.67 0.68093
Target:  5'- cAUGCGGggGUGGUgAUgguggcuucgaugCGGUGuuGGu -3'
miRNA:   3'- cUACGCCaaCAUCGgUA-------------GCCACggCC- -5'
19594 3' -55.2 NC_004686.1 + 56095 0.67 0.671117
Target:  5'- gGGUGcCGGgcggGUGGgCGaCGGUGCCGu -3'
miRNA:   3'- -CUAC-GCCaa--CAUCgGUaGCCACGGCc -5'
19594 3' -55.2 NC_004686.1 + 21894 0.68 0.627251
Target:  5'- gGcgGCGGcgGUGGCgGUggCGGUGCCu- -3'
miRNA:   3'- -CuaCGCCaaCAUCGgUA--GCCACGGcc -5'
19594 3' -55.2 NC_004686.1 + 5412 0.68 0.59436
Target:  5'- aGGU-CGGgcGUGGCUga-GGUGCCGGu -3'
miRNA:   3'- -CUAcGCCaaCAUCGGuagCCACGGCC- -5'
19594 3' -55.2 NC_004686.1 + 53471 0.68 0.59436
Target:  5'- --gGUGGUggUGUcGaCCGUucCGGUGCCGGa -3'
miRNA:   3'- cuaCGCCA--ACAuC-GGUA--GCCACGGCC- -5'
19594 3' -55.2 NC_004686.1 + 11898 0.69 0.561754
Target:  5'- --cGCuGGUcUGccuccugGGCCgGUCGGUGCCGGu -3'
miRNA:   3'- cuaCG-CCA-ACa------UCGG-UAGCCACGGCC- -5'
19594 3' -55.2 NC_004686.1 + 55261 0.71 0.438153
Target:  5'- -uUGCGGauuugGUGGgCGUCGGcggcUGCCGGu -3'
miRNA:   3'- cuACGCCaa---CAUCgGUAGCC----ACGGCC- -5'
19594 3' -55.2 NC_004686.1 + 32098 0.77 0.188505
Target:  5'- gGGUGUGGccgUGUGGCCGcaagcaugggucUCGGUGCaCGGa -3'
miRNA:   3'- -CUACGCCa--ACAUCGGU------------AGCCACG-GCC- -5'
19594 3' -55.2 NC_004686.1 + 5906 0.79 0.14756
Target:  5'- gGAUGCGcGUcuggccgGUGGCUAUCGGcUGCCGGc -3'
miRNA:   3'- -CUACGC-CAa------CAUCGGUAGCC-ACGGCC- -5'
19594 3' -55.2 NC_004686.1 + 22473 1.1 0.000884
Target:  5'- cGAUGCGGUUGUAGCCAUCGGUGCCGGu -3'
miRNA:   3'- -CUACGCCAACAUCGGUAGCCACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.