miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19594 5' -64.8 NC_004686.1 + 22435 1.04 0.000259
Target:  5'- gAGCCGUCACCGCUGCCGCCCGCCGAUc -3'
miRNA:   3'- -UCGGCAGUGGCGACGGCGGGCGGCUA- -5'
19594 5' -64.8 NC_004686.1 + 22270 0.75 0.052114
Target:  5'- uGCUGcCGCCGUUGCCGCcguugCCGCCGGa -3'
miRNA:   3'- uCGGCaGUGGCGACGGCG-----GGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 22387 0.74 0.070498
Target:  5'- gGGCCGUCGCUgguuccguuGUUGCCG-CCGCUGAUg -3'
miRNA:   3'- -UCGGCAGUGG---------CGACGGCgGGCGGCUA- -5'
19594 5' -64.8 NC_004686.1 + 39044 0.72 0.092505
Target:  5'- uGGCCGgcuUCACCGgUGCCaGCUCGCCa-- -3'
miRNA:   3'- -UCGGC---AGUGGCgACGG-CGGGCGGcua -5'
19594 5' -64.8 NC_004686.1 + 48922 0.72 0.10029
Target:  5'- uGGCCGccgcccuucUCGCCGCUGCUGUUguaGCCGAg -3'
miRNA:   3'- -UCGGC---------AGUGGCGACGGCGGg--CGGCUa -5'
19594 5' -64.8 NC_004686.1 + 21917 0.71 0.114654
Target:  5'- gAGCCGcCGcCCGC-GcCCGCgCCGCCGAg -3'
miRNA:   3'- -UCGGCaGU-GGCGaC-GGCG-GGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 35054 0.7 0.124173
Target:  5'- uGGCCGUCACCgagGCUGgCGUcuggUCGCUGAUg -3'
miRNA:   3'- -UCGGCAGUGG---CGACgGCG----GGCGGCUA- -5'
19594 5' -64.8 NC_004686.1 + 22078 0.7 0.13231
Target:  5'- uGCCGUCACCGgaauacgccuuggcaCcGCCaGCgCCGCCGAg -3'
miRNA:   3'- uCGGCAGUGGC---------------GaCGG-CG-GGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 31689 0.7 0.13442
Target:  5'- -aCCGUCGCCGCcGUaUGCCgCGCCGAa -3'
miRNA:   3'- ucGGCAGUGGCGaCG-GCGG-GCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 9788 0.69 0.157281
Target:  5'- uGCCGcCACUGCgGUCGCC-GCCGGc -3'
miRNA:   3'- uCGGCaGUGGCGaCGGCGGgCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 19158 0.69 0.169985
Target:  5'- cAGCCGcccUCACCGaaCUGCgccaaagaCGCCUGCCGGc -3'
miRNA:   3'- -UCGGC---AGUGGC--GACG--------GCGGGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 12215 0.68 0.178957
Target:  5'- cGCCGgCGCCGaaaCUGCCCGCCGu- -3'
miRNA:   3'- uCGGCaGUGGCgacGGCGGGCGGCua -5'
19594 5' -64.8 NC_004686.1 + 13690 0.68 0.183599
Target:  5'- cAGCCG-CGgCGCUGgucCCGCCCGUgGGg -3'
miRNA:   3'- -UCGGCaGUgGCGAC---GGCGGGCGgCUa -5'
19594 5' -64.8 NC_004686.1 + 17729 0.68 0.183599
Target:  5'- -aCCGUCACUGCUGCgcgacuUGCCCGCa--- -3'
miRNA:   3'- ucGGCAGUGGCGACG------GCGGGCGgcua -5'
19594 5' -64.8 NC_004686.1 + 25182 0.68 0.188347
Target:  5'- cGCCGUCGagGCUGCCGCaaCCGCagugGAa -3'
miRNA:   3'- uCGGCAGUggCGACGGCG--GGCGg---CUa -5'
19594 5' -64.8 NC_004686.1 + 40130 0.67 0.208432
Target:  5'- cGCCGacCACUGgUGCagGCUCGCCGAg -3'
miRNA:   3'- uCGGCa-GUGGCgACGg-CGGGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 27392 0.67 0.208432
Target:  5'- uGcCCGUgaacgCGCCGCUGCacuaccgGCUCGCCGAc -3'
miRNA:   3'- uC-GGCA-----GUGGCGACGg------CGGGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 6022 0.67 0.213735
Target:  5'- uGCUGuucuUCGCCGCUGCaCGUuUCGCCGGc -3'
miRNA:   3'- uCGGC----AGUGGCGACG-GCG-GGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 25242 0.67 0.224687
Target:  5'- cGCCGcCGCUGCUGCgaaaGCaCUGgCCGAUg -3'
miRNA:   3'- uCGGCaGUGGCGACGg---CG-GGC-GGCUA- -5'
19594 5' -64.8 NC_004686.1 + 38650 0.67 0.235529
Target:  5'- -uUCGUCGCCGCUGCggaaucgguguauUGCCCGCg--- -3'
miRNA:   3'- ucGGCAGUGGCGACG-------------GCGGGCGgcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.