miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19594 5' -64.8 NC_004686.1 + 35054 0.7 0.124173
Target:  5'- uGGCCGUCACCgagGCUGgCGUcuggUCGCUGAUg -3'
miRNA:   3'- -UCGGCAGUGG---CGACgGCG----GGCGGCUA- -5'
19594 5' -64.8 NC_004686.1 + 21917 0.71 0.114654
Target:  5'- gAGCCGcCGcCCGC-GcCCGCgCCGCCGAg -3'
miRNA:   3'- -UCGGCaGU-GGCGaC-GGCG-GGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 48922 0.72 0.10029
Target:  5'- uGGCCGccgcccuucUCGCCGCUGCUGUUguaGCCGAg -3'
miRNA:   3'- -UCGGC---------AGUGGCGACGGCGGg--CGGCUa -5'
19594 5' -64.8 NC_004686.1 + 39044 0.72 0.092505
Target:  5'- uGGCCGgcuUCACCGgUGCCaGCUCGCCa-- -3'
miRNA:   3'- -UCGGC---AGUGGCgACGG-CGGGCGGcua -5'
19594 5' -64.8 NC_004686.1 + 22387 0.74 0.070498
Target:  5'- gGGCCGUCGCUgguuccguuGUUGCCG-CCGCUGAUg -3'
miRNA:   3'- -UCGGCAGUGG---------CGACGGCgGGCGGCUA- -5'
19594 5' -64.8 NC_004686.1 + 22270 0.75 0.052114
Target:  5'- uGCUGcCGCCGUUGCCGCcguugCCGCCGGa -3'
miRNA:   3'- uCGGCaGUGGCGACGGCG-----GGCGGCUa -5'
19594 5' -64.8 NC_004686.1 + 22435 1.04 0.000259
Target:  5'- gAGCCGUCACCGCUGCCGCCCGCCGAUc -3'
miRNA:   3'- -UCGGCAGUGGCGACGGCGGGCGGCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.