miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19595 3' -53.4 NC_004686.1 + 40221 0.66 0.859313
Target:  5'- cUCGCCUGGUGUACUGcucGAugGCgUGCc -3'
miRNA:   3'- -GGCGGGCUAUGUGGCua-CUugCG-ACG- -5'
19595 3' -53.4 NC_004686.1 + 24412 0.66 0.859313
Target:  5'- uUGUCCGccGCuGCCGGUG-GCGCaUGCg -3'
miRNA:   3'- gGCGGGCuaUG-UGGCUACuUGCG-ACG- -5'
19595 3' -53.4 NC_004686.1 + 28268 0.66 0.859313
Target:  5'- cCUGUCCGAUAacaACCGGUGu-CGCc-- -3'
miRNA:   3'- -GGCGGGCUAUg--UGGCUACuuGCGacg -5'
19595 3' -53.4 NC_004686.1 + 32713 0.66 0.859313
Target:  5'- gCCGaCCCag-AUGCCGuucGAGCGCUGg -3'
miRNA:   3'- -GGC-GGGcuaUGUGGCua-CUUGCGACg -5'
19595 3' -53.4 NC_004686.1 + 36509 0.66 0.850957
Target:  5'- cCCGCCCGuguucuuUACaacccggagGCCGAcaagUGAguACGuCUGCu -3'
miRNA:   3'- -GGCGGGCu------AUG---------UGGCU----ACU--UGC-GACG- -5'
19595 3' -53.4 NC_004686.1 + 46861 0.66 0.850957
Target:  5'- uCCGCCCGAgcCACCGcccgGAcCGUa-- -3'
miRNA:   3'- -GGCGGGCUauGUGGCua--CUuGCGacg -5'
19595 3' -53.4 NC_004686.1 + 7705 0.66 0.850957
Target:  5'- gCCGCaggCCGGUcCGCUGAUG-ACGaaGCg -3'
miRNA:   3'- -GGCG---GGCUAuGUGGCUACuUGCgaCG- -5'
19595 3' -53.4 NC_004686.1 + 11421 0.66 0.848405
Target:  5'- gCCGCCCGGUAUGCgGGacauuUGGAagcacccauaugacCGCaGCa -3'
miRNA:   3'- -GGCGGGCUAUGUGgCU-----ACUU--------------GCGaCG- -5'
19595 3' -53.4 NC_004686.1 + 54008 0.66 0.842372
Target:  5'- aUCGaUCCGAUACACCGAcGAucACGUc-- -3'
miRNA:   3'- -GGC-GGGCUAUGUGGCUaCU--UGCGacg -5'
19595 3' -53.4 NC_004686.1 + 26410 0.66 0.841502
Target:  5'- -gGCCCGAcGCACaGAUcaucuccaugcgcGAcaccuGCGCUGCg -3'
miRNA:   3'- ggCGGGCUaUGUGgCUA-------------CU-----UGCGACG- -5'
19595 3' -53.4 NC_004686.1 + 22662 0.66 0.840629
Target:  5'- aCCGguCCCGAcaagggcuggcCGCCGGUGAugGUgaggGCg -3'
miRNA:   3'- -GGC--GGGCUau---------GUGGCUACUugCGa---CG- -5'
19595 3' -53.4 NC_004686.1 + 47545 0.66 0.839754
Target:  5'- aUGCCCGugaugcggaguuggaGCGCCGGcUGGcccGCGCUGUc -3'
miRNA:   3'- gGCGGGCua-------------UGUGGCU-ACU---UGCGACG- -5'
19595 3' -53.4 NC_004686.1 + 42114 0.66 0.833568
Target:  5'- gUGCCaucgACACCGGUGAAaaaccCGUUGUg -3'
miRNA:   3'- gGCGGgcuaUGUGGCUACUU-----GCGACG- -5'
19595 3' -53.4 NC_004686.1 + 5347 0.66 0.833568
Target:  5'- aCGCCCGAccugGCUGuUGAG-GCUGCu -3'
miRNA:   3'- gGCGGGCUaug-UGGCuACUUgCGACG- -5'
19595 3' -53.4 NC_004686.1 + 9996 0.66 0.833568
Target:  5'- -aGCaguaCGGggugACCGGUGAgGCGCUGCa -3'
miRNA:   3'- ggCGg---GCUaug-UGGCUACU-UGCGACG- -5'
19595 3' -53.4 NC_004686.1 + 53497 0.66 0.830885
Target:  5'- gUCGCCCaagaccaggcaGcgGCACCGGUGGugGUgucgaccguuccggUGCc -3'
miRNA:   3'- -GGCGGG-----------CuaUGUGGCUACUugCG--------------ACG- -5'
19595 3' -53.4 NC_004686.1 + 38520 0.66 0.824552
Target:  5'- uCCGCCUgggcguggGGUGCggcgaguccgggGCCGAUGAugccCGCgGCg -3'
miRNA:   3'- -GGCGGG--------CUAUG------------UGGCUACUu---GCGaCG- -5'
19595 3' -53.4 NC_004686.1 + 42571 0.67 0.815335
Target:  5'- gCGUggaCCGAacggGCACCGAUGAu--CUGCg -3'
miRNA:   3'- gGCG---GGCUa---UGUGGCUACUugcGACG- -5'
19595 3' -53.4 NC_004686.1 + 19464 0.67 0.815335
Target:  5'- -gGuCCUGGUGCucCUGGUGGugGCUGg -3'
miRNA:   3'- ggC-GGGCUAUGu-GGCUACUugCGACg -5'
19595 3' -53.4 NC_004686.1 + 26060 0.67 0.814402
Target:  5'- gCGCCCugcucucGGUG-ACCGGUuGAaaACGCUGCc -3'
miRNA:   3'- gGCGGG-------CUAUgUGGCUA-CU--UGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.