miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19595 5' -58.9 NC_004686.1 + 17888 0.66 0.495551
Target:  5'- gAUGUGGaGUg-GCCGggUGUUGaGCUGu -3'
miRNA:   3'- -UACGCC-CGgaCGGCuuACAACcCGAC- -5'
19595 5' -58.9 NC_004686.1 + 22796 0.66 0.475194
Target:  5'- -gGCGGGUgaGCUGAGUGaccaccGGCUGu -3'
miRNA:   3'- uaCGCCCGgaCGGCUUACaac---CCGAC- -5'
19595 5' -58.9 NC_004686.1 + 39803 0.66 0.464177
Target:  5'- -gGCGGGCCgccuggGCCaggacauguucagGGAUGgggucgUGGGCUu -3'
miRNA:   3'- uaCGCCCGGa-----CGG-------------CUUACa-----ACCCGAc -5'
19595 5' -58.9 NC_004686.1 + 42616 0.66 0.462188
Target:  5'- uGUGCGGGagUUGgagucgguucaggaCCGggUGUUGGaGCUGc -3'
miRNA:   3'- -UACGCCCg-GAC--------------GGCuuACAACC-CGAC- -5'
19595 5' -58.9 NC_004686.1 + 4052 0.66 0.445468
Target:  5'- -cGCGuGCCUGCgGAuccuccUGGGCUGa -3'
miRNA:   3'- uaCGCcCGGACGgCUuaca--ACCCGAC- -5'
19595 5' -58.9 NC_004686.1 + 26277 0.66 0.445468
Target:  5'- -aGUGGGCCUG-CGAGgucgGGGCg- -3'
miRNA:   3'- uaCGCCCGGACgGCUUacaaCCCGac -5'
19595 5' -58.9 NC_004686.1 + 51849 0.68 0.366455
Target:  5'- uUGCGGGCUucgacgauguUGCCGucagcuucgaUGGGCUGg -3'
miRNA:   3'- uACGCCCGG----------ACGGCuuaca-----ACCCGAC- -5'
19595 5' -58.9 NC_004686.1 + 24257 0.71 0.218409
Target:  5'- gGUGCGGGCCUccuguuggggguggGCCGccUGgcgGGGUUGg -3'
miRNA:   3'- -UACGCCCGGA--------------CGGCuuACaa-CCCGAC- -5'
19595 5' -58.9 NC_004686.1 + 11775 0.73 0.182787
Target:  5'- -cGCGGGCagcGCCGGAuccaUGUaugGGGCUGg -3'
miRNA:   3'- uaCGCCCGga-CGGCUU----ACAa--CCCGAC- -5'
19595 5' -58.9 NC_004686.1 + 22729 1.07 0.000493
Target:  5'- gAUGCGGGCCUGCCGAAUGUUGGGCUGg -3'
miRNA:   3'- -UACGCCCGGACGGCUUACAACCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.