miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19596 5' -55.4 NC_004686.1 + 46955 0.66 0.717595
Target:  5'- gGggGGUgagucGUACGGuCCGGGcggugGCUCGGg -3'
miRNA:   3'- aCuuCCG-----UAUGUC-GGUCCa----UGGGCCg -5'
19596 5' -55.4 NC_004686.1 + 4091 0.66 0.706815
Target:  5'- gUGucauGGGCAuugcUACuGCgAGGcuguCCCGGCg -3'
miRNA:   3'- -ACu---UCCGU----AUGuCGgUCCau--GGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 33844 0.66 0.705733
Target:  5'- cGAcGGCGacUugGGCCGGGgugACgcgaaggCCGGCc -3'
miRNA:   3'- aCUuCCGU--AugUCGGUCCa--UG-------GGCCG- -5'
19596 5' -55.4 NC_004686.1 + 50527 0.66 0.695962
Target:  5'- aGggGaaCAUGCGGCCGG--AUCCGGUg -3'
miRNA:   3'- aCuuCc-GUAUGUCGGUCcaUGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 8108 0.66 0.692693
Target:  5'- cGAGGGCcaggugacagagauCGGUgAGGUgACCUGGCu -3'
miRNA:   3'- aCUUCCGuau-----------GUCGgUCCA-UGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 30389 0.66 0.685045
Target:  5'- gUGAGGGUgauUACGGCCcuacuGGcgagAUCCGGUu -3'
miRNA:   3'- -ACUUCCGu--AUGUCGGu----CCa---UGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 35264 0.66 0.674078
Target:  5'- cGAAGGCGUugGaguuGUC-GGU-UCCGGCg -3'
miRNA:   3'- aCUUCCGUAugU----CGGuCCAuGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 35335 0.66 0.674078
Target:  5'- gUGucGG-AUGCGGCgaAGGUguugucgcgugACCCGGCg -3'
miRNA:   3'- -ACuuCCgUAUGUCGg-UCCA-----------UGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 4900 0.66 0.663071
Target:  5'- ---cGGCAcauuucaACuGCCGaagcaccuGGUGCCCGGCg -3'
miRNA:   3'- acuuCCGUa------UGuCGGU--------CCAUGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 26706 0.66 0.663071
Target:  5'- cGGAGGCAgcguCGGCCcGGgcUgCGGUu -3'
miRNA:   3'- aCUUCCGUau--GUCGGuCCauGgGCCG- -5'
19596 5' -55.4 NC_004686.1 + 37576 0.67 0.629917
Target:  5'- -cGGGGUgAUGCGGUaguucuccagCAGGUACuuGGCg -3'
miRNA:   3'- acUUCCG-UAUGUCG----------GUCCAUGggCCG- -5'
19596 5' -55.4 NC_004686.1 + 19042 0.68 0.596778
Target:  5'- gUGuGGGCG---GGUCGGGUGCuggCCGGCa -3'
miRNA:   3'- -ACuUCCGUaugUCGGUCCAUG---GGCCG- -5'
19596 5' -55.4 NC_004686.1 + 6173 0.68 0.58578
Target:  5'- aGAAgGGUcgGCGGCCAGGcauggcgcgACCCGugacGCg -3'
miRNA:   3'- aCUU-CCGuaUGUCGGUCCa--------UGGGC----CG- -5'
19596 5' -55.4 NC_004686.1 + 8386 0.68 0.563911
Target:  5'- cUGAGGGCcUGCccguGGCCAGGcccaGCCaCGGa -3'
miRNA:   3'- -ACUUCCGuAUG----UCGGUCCa---UGG-GCCg -5'
19596 5' -55.4 NC_004686.1 + 38046 0.68 0.553055
Target:  5'- aUGggGGCGUugcgggugACGGgCAGGUcgGCCCaGUu -3'
miRNA:   3'- -ACuuCCGUA--------UGUCgGUCCA--UGGGcCG- -5'
19596 5' -55.4 NC_004686.1 + 19090 0.69 0.531542
Target:  5'- gUGAGGGCGgcUGGCCcGGUaaGCCgaaCGGCa -3'
miRNA:   3'- -ACUUCCGUauGUCGGuCCA--UGG---GCCG- -5'
19596 5' -55.4 NC_004686.1 + 41474 0.69 0.510339
Target:  5'- aGAGGGCGagugugGCAGUCGGGUcacucAUUCGGUc -3'
miRNA:   3'- aCUUCCGUa-----UGUCGGUCCA-----UGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 41994 0.69 0.509288
Target:  5'- cUGAAGGUgccgccgacgaGUACGGggcaaucCCAGGUGCCC-GCu -3'
miRNA:   3'- -ACUUCCG-----------UAUGUC-------GGUCCAUGGGcCG- -5'
19596 5' -55.4 NC_004686.1 + 12556 0.69 0.499869
Target:  5'- cGggGGUAgGC-GCCcccGGU-CCCGGCg -3'
miRNA:   3'- aCuuCCGUaUGuCGGu--CCAuGGGCCG- -5'
19596 5' -55.4 NC_004686.1 + 30388 0.7 0.459008
Target:  5'- ---cGGCAcgguCGGUCAGGUACUCGGa -3'
miRNA:   3'- acuuCCGUau--GUCGGUCCAUGGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.