miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19598 3' -52.6 NC_004686.1 + 9019 0.66 0.883772
Target:  5'- cCCAgGAgauuCGGGggCCGAUGUCUcggaUGGUCc -3'
miRNA:   3'- aGGUgCU----GCCUa-GGCUGCAGA----ACUAG- -5'
19598 3' -52.6 NC_004686.1 + 36976 0.66 0.868189
Target:  5'- gCCACucCGGAUCCGACGcC---AUCa -3'
miRNA:   3'- aGGUGcuGCCUAGGCUGCaGaacUAG- -5'
19598 3' -52.6 NC_004686.1 + 21027 0.66 0.851613
Target:  5'- gCUGCGGCGGGuUCUGAUGUgUUuGUCg -3'
miRNA:   3'- aGGUGCUGCCU-AGGCUGCAgAAcUAG- -5'
19598 3' -52.6 NC_004686.1 + 28132 0.67 0.806253
Target:  5'- gUCUACGGCGGAgaugCCGACGg------- -3'
miRNA:   3'- -AGGUGCUGCCUa---GGCUGCagaacuag -5'
19598 3' -52.6 NC_004686.1 + 15869 0.68 0.786744
Target:  5'- gUCCGCGGCGGAUCaCcAUGUC---GUCg -3'
miRNA:   3'- -AGGUGCUGCCUAG-GcUGCAGaacUAG- -5'
19598 3' -52.6 NC_004686.1 + 29520 0.68 0.786744
Target:  5'- aUCCACGAC-GAUCCGuCaUCgcgGAUCc -3'
miRNA:   3'- -AGGUGCUGcCUAGGCuGcAGaa-CUAG- -5'
19598 3' -52.6 NC_004686.1 + 23479 0.69 0.73532
Target:  5'- uUUCugGugGGcUCCGAUGUUggUGGUUg -3'
miRNA:   3'- -AGGugCugCCuAGGCUGCAGa-ACUAG- -5'
19598 3' -52.6 NC_004686.1 + 5191 0.69 0.724673
Target:  5'- aCCAUGGCGGAccugUCCGGUGUUgcucugGGUCg -3'
miRNA:   3'- aGGUGCUGCCU----AGGCUGCAGaa----CUAG- -5'
19598 3' -52.6 NC_004686.1 + 25938 0.71 0.626022
Target:  5'- aCCGCGACGaugucaCCGACGUCggcgaaaccgUUGAUCu -3'
miRNA:   3'- aGGUGCUGCcua---GGCUGCAG----------AACUAG- -5'
19598 3' -52.6 NC_004686.1 + 50921 0.71 0.581855
Target:  5'- cCCAC-ACGGAUUCGACGUC---GUCg -3'
miRNA:   3'- aGGUGcUGCCUAGGCUGCAGaacUAG- -5'
19598 3' -52.6 NC_004686.1 + 25692 1.1 0.00187
Target:  5'- cUCCACGACGGAUCCGACGUCUUGAUCu -3'
miRNA:   3'- -AGGUGCUGCCUAGGCUGCAGAACUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.