miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19598 5' -61.1 NC_004686.1 + 25658 1.09 0.000277
Target:  5'- uGUACCGCAGGCCGGCGGACUCGUGGCc -3'
miRNA:   3'- -CAUGGCGUCCGGCCGCCUGAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 42933 0.72 0.161818
Target:  5'- -cACCGCAGGCCc-CGGGCUCucGGCg -3'
miRNA:   3'- caUGGCGUCCGGccGCCUGAGcaCCG- -5'
19598 5' -61.1 NC_004686.1 + 38415 0.71 0.204306
Target:  5'- -cGCCGCGGGCaucauCGGCcccGGACUCGccGCa -3'
miRNA:   3'- caUGGCGUCCG-----GCCG---CCUGAGCacCG- -5'
19598 5' -61.1 NC_004686.1 + 6993 0.71 0.204306
Target:  5'- --uCCGaucGGCUGGUGGugUgGUGGCg -3'
miRNA:   3'- cauGGCgu-CCGGCCGCCugAgCACCG- -5'
19598 5' -61.1 NC_004686.1 + 908 0.71 0.209583
Target:  5'- -cGCgGCAGGCCGGCaaaacguggGGugUCaUGGUc -3'
miRNA:   3'- caUGgCGUCCGGCCG---------CCugAGcACCG- -5'
19598 5' -61.1 NC_004686.1 + 25893 0.71 0.211726
Target:  5'- -gGCCGCGGGCCGGCgcacagccaguaccaGGACgcugCGaGGa -3'
miRNA:   3'- caUGGCGUCCGGCCG---------------CCUGa---GCaCCg -5'
19598 5' -61.1 NC_004686.1 + 17001 0.7 0.224419
Target:  5'- -cGCCgGCGGGUCGGCguaaucaugggugcGGACUgGUGGa -3'
miRNA:   3'- caUGG-CGUCCGGCCG--------------CCUGAgCACCg -5'
19598 5' -61.1 NC_004686.1 + 12526 0.7 0.228408
Target:  5'- -gGCCGCAGgcugccagccaGCCGGUGaccccggagcagaccGACUgGUGGCg -3'
miRNA:   3'- caUGGCGUC-----------CGGCCGC---------------CUGAgCACCG- -5'
19598 5' -61.1 NC_004686.1 + 7704 0.7 0.243753
Target:  5'- -gGCCGCAGGCCGGUccgcugauGACgaagCGUuuuucGGCg -3'
miRNA:   3'- caUGGCGUCCGGCCGc-------CUGa---GCA-----CCG- -5'
19598 5' -61.1 NC_004686.1 + 39474 0.69 0.262512
Target:  5'- --uCCGC-GGCCagGGuUGGACUCGUGaGCa -3'
miRNA:   3'- cauGGCGuCCGG--CC-GCCUGAGCAC-CG- -5'
19598 5' -61.1 NC_004686.1 + 10526 0.69 0.282429
Target:  5'- aGUG-CGCAacucGuuGGCGGugUCGUGGUc -3'
miRNA:   3'- -CAUgGCGUc---CggCCGCCugAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 15582 0.68 0.318248
Target:  5'- aGUACCGCAGGCCGucCGGuaaugaGC-CGcacUGGCu -3'
miRNA:   3'- -CAUGGCGUCCGGCc-GCC------UGaGC---ACCG- -5'
19598 5' -61.1 NC_004686.1 + 52863 0.68 0.32581
Target:  5'- -gAUCGguGGCCGGuCGGAaugaaacgUCG-GGCg -3'
miRNA:   3'- caUGGCguCCGGCC-GCCUg-------AGCaCCG- -5'
19598 5' -61.1 NC_004686.1 + 44971 0.68 0.333504
Target:  5'- -cACUGUucucAGGCauCGGCGGACUCGaacugGGUu -3'
miRNA:   3'- caUGGCG----UCCG--GCCGCCUGAGCa----CCG- -5'
19598 5' -61.1 NC_004686.1 + 12889 0.68 0.34133
Target:  5'- aUAUCGCGGauccCCGGCuGACUCaUGGCc -3'
miRNA:   3'- cAUGGCGUCc---GGCCGcCUGAGcACCG- -5'
19598 5' -61.1 NC_004686.1 + 30084 0.67 0.357377
Target:  5'- -gACCGUuccAGGCCcGU--ACUCGUGGCa -3'
miRNA:   3'- caUGGCG---UCCGGcCGccUGAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 3984 0.67 0.373947
Target:  5'- --uCCGCAGGCC-GCGGAUacaUGcGGCg -3'
miRNA:   3'- cauGGCGUCCGGcCGCCUGa--GCaCCG- -5'
19598 5' -61.1 NC_004686.1 + 32120 0.67 0.382425
Target:  5'- -gGCUGUGGGaaagCGGUGGAUggggUGUGGCc -3'
miRNA:   3'- caUGGCGUCCg---GCCGCCUGa---GCACCG- -5'
19598 5' -61.1 NC_004686.1 + 7215 0.67 0.39103
Target:  5'- -cACCGCAGcgacgcugguacGCCaGCGucCUUGUGGCc -3'
miRNA:   3'- caUGGCGUC------------CGGcCGCcuGAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 22206 0.66 0.39976
Target:  5'- gGUGCCGCcgAGGCCGcGCGcGccacuGCUCGacgaguUGGUg -3'
miRNA:   3'- -CAUGGCG--UCCGGC-CGC-C-----UGAGC------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.