miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19599 5' -67.6 NC_004686.1 + 19998 0.66 0.221282
Target:  5'- gCCCG--UGCGGGCUGGUgauGUACaAGCCGa -3'
miRNA:   3'- -GGGCcgGCGCCCGGCCG---CGUG-UCGGU- -5'
19599 5' -67.6 NC_004686.1 + 12234 0.66 0.220746
Target:  5'- gCUGGCCccGCGGccugaccGCCGGCGCcgaaACuGCCc -3'
miRNA:   3'- gGGCCGG--CGCC-------CGGCCGCG----UGuCGGu -5'
19599 5' -67.6 NC_004686.1 + 25666 0.66 0.215978
Target:  5'- cUCCGccauguaCCGCaGGCCGGCGgACucguGGCCGa -3'
miRNA:   3'- -GGGCc------GGCGcCCGGCCGCgUG----UCGGU- -5'
19599 5' -67.6 NC_004686.1 + 22334 0.66 0.215978
Target:  5'- gCCGGUaaugGCGGGUucggauCGGCGgGCGGCa- -3'
miRNA:   3'- gGGCCGg---CGCCCG------GCCGCgUGUCGgu -5'
19599 5' -67.6 NC_004686.1 + 12522 0.66 0.215978
Target:  5'- cCUgGGCCGCaGGCUGccaGC-CAGCCGg -3'
miRNA:   3'- -GGgCCGGCGcCCGGCcg-CGuGUCGGU- -5'
19599 5' -67.6 NC_004686.1 + 22824 0.66 0.210784
Target:  5'- aCCGcgauaGCCGCGGcGCCGGgGguUAGgCGg -3'
miRNA:   3'- gGGC-----CGGCGCC-CGGCCgCguGUCgGU- -5'
19599 5' -67.6 NC_004686.1 + 40707 0.66 0.200719
Target:  5'- uCCCGGCCGCccuGGUcgaacguggCGGCGuCGCAaCCGg -3'
miRNA:   3'- -GGGCCGGCGc--CCG---------GCCGC-GUGUcGGU- -5'
19599 5' -67.6 NC_004686.1 + 47396 0.66 0.196327
Target:  5'- uUCGGCUGCGGaaaccacgggucguaGgCGGCGCACuucgcaagagcauuGGCCGc -3'
miRNA:   3'- gGGCCGGCGCC---------------CgGCCGCGUG--------------UCGGU- -5'
19599 5' -67.6 NC_004686.1 + 42991 0.66 0.195844
Target:  5'- aCgGGCUGUGGGCaugCGGUgcuugucaccGCugGGCCGa -3'
miRNA:   3'- gGgCCGGCGCCCG---GCCG----------CGugUCGGU- -5'
19599 5' -67.6 NC_004686.1 + 52871 0.66 0.195844
Target:  5'- gCCGGUCGgaaugaaacguCGGGCgccaggaucaugCGGCGCAUGGCUc -3'
miRNA:   3'- gGGCCGGC-----------GCCCG------------GCCGCGUGUCGGu -5'
19599 5' -67.6 NC_004686.1 + 4709 0.66 0.195844
Target:  5'- aCCGcGCCGCGGaGCaGGCGaaugccgaGGCCGa -3'
miRNA:   3'- gGGC-CGGCGCC-CGgCCGCgug-----UCGGU- -5'
19599 5' -67.6 NC_004686.1 + 17630 0.67 0.191073
Target:  5'- gCCGGCUggucuauugauGCGGGCaaGuCGCGCAGCa- -3'
miRNA:   3'- gGGCCGG-----------CGCCCGgcC-GCGUGUCGgu -5'
19599 5' -67.6 NC_004686.1 + 46598 0.67 0.186405
Target:  5'- --aGGCuCGCGGGCgaauucauCGGCGUACAGaUCGg -3'
miRNA:   3'- gggCCG-GCGCCCG--------GCCGCGUGUC-GGU- -5'
19599 5' -67.6 NC_004686.1 + 26490 0.67 0.181386
Target:  5'- aUCGGCCacaaggaGUGGGCCGGUGCu--GCgCAa -3'
miRNA:   3'- gGGCCGG-------CGCCCGGCCGCGuguCG-GU- -5'
19599 5' -67.6 NC_004686.1 + 21171 0.67 0.177369
Target:  5'- uUCCGcGCCGCggGGGCUGGCacugguucaGCGCAGaCGu -3'
miRNA:   3'- -GGGC-CGGCG--CCCGGCCG---------CGUGUCgGU- -5'
19599 5' -67.6 NC_004686.1 + 39825 0.67 0.177369
Target:  5'- cCCCGGUCGUGGcugggaccGCCGGCaGUGC-GCUg -3'
miRNA:   3'- -GGGCCGGCGCC--------CGGCCG-CGUGuCGGu -5'
19599 5' -67.6 NC_004686.1 + 3984 0.67 0.168725
Target:  5'- uCCgcaGGCCGCGGauacaugCGGCGCACccGGCCc -3'
miRNA:   3'- -GGg--CCGGCGCCcg-----GCCGCGUG--UCGGu -5'
19599 5' -67.6 NC_004686.1 + 8307 0.67 0.164546
Target:  5'- gCCUGGCCacCGGGCaGGCccucagGCcCAGCCAa -3'
miRNA:   3'- -GGGCCGGc-GCCCGgCCG------CGuGUCGGU- -5'
19599 5' -67.6 NC_004686.1 + 21833 0.67 0.164546
Target:  5'- cCUCGGCggCGCGGGCgCGG-GCgGCGGCUc -3'
miRNA:   3'- -GGGCCG--GCGCCCG-GCCgCG-UGUCGGu -5'
19599 5' -67.6 NC_004686.1 + 12114 0.68 0.162083
Target:  5'- aCCgCGGCUucggcugccgcaacgGCGGGCaguuuCGGCGCcgGCGGUCAg -3'
miRNA:   3'- -GG-GCCGG---------------CGCCCG-----GCCGCG--UGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.