miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19600 3' -57.2 NC_004686.1 + 6149 0.66 0.598974
Target:  5'- uGAUCGGCGcGGUGaugCGCU-GGucGCAa -3'
miRNA:   3'- -CUAGCCGC-CCACga-GCGGuCCuuUGU- -5'
19600 3' -57.2 NC_004686.1 + 23932 0.66 0.574041
Target:  5'- aGAUCGGCGaaGGUGUcccguccgaaucgaUCGUCAGGGu--- -3'
miRNA:   3'- -CUAGCCGC--CCACG--------------AGCGGUCCUuugu -5'
19600 3' -57.2 NC_004686.1 + 26064 0.67 0.545095
Target:  5'- -uUCGG-GGGUGUgauaUUGCCGGG-GACAa -3'
miRNA:   3'- cuAGCCgCCCACG----AGCGGUCCuUUGU- -5'
19600 3' -57.2 NC_004686.1 + 56103 0.68 0.492874
Target:  5'- gGGUUGGCGGGUGC-CgGgCGGGuGGGCGa -3'
miRNA:   3'- -CUAGCCGCCCACGaG-CgGUCC-UUUGU- -5'
19600 3' -57.2 NC_004686.1 + 19050 0.68 0.4827
Target:  5'- ---gGGuCGGGUGCUgGCCGGcAGGCGu -3'
miRNA:   3'- cuagCC-GCCCACGAgCGGUCcUUUGU- -5'
19600 3' -57.2 NC_004686.1 + 51028 0.69 0.442104
Target:  5'- aGUCGGUGGaaUGCUCGUCGcggggcuGGAAACAc -3'
miRNA:   3'- cUAGCCGCCc-ACGAGCGGU-------CCUUUGU- -5'
19600 3' -57.2 NC_004686.1 + 42605 0.7 0.378409
Target:  5'- --aCGGCGGGgcuUGUcuUCGCCGGGGAu-- -3'
miRNA:   3'- cuaGCCGCCC---ACG--AGCGGUCCUUugu -5'
19600 3' -57.2 NC_004686.1 + 56138 0.73 0.243174
Target:  5'- cGGUC-GCGGGUGCcgaacCGCCAGGcGACGc -3'
miRNA:   3'- -CUAGcCGCCCACGa----GCGGUCCuUUGU- -5'
19600 3' -57.2 NC_004686.1 + 78 0.74 0.219187
Target:  5'- cGUCGGCGGGcugagGUUCGCCGGcGuGACGg -3'
miRNA:   3'- cUAGCCGCCCa----CGAGCGGUC-CuUUGU- -5'
19600 3' -57.2 NC_004686.1 + 11175 0.8 0.085968
Target:  5'- cAUCGGCGGugagcauGUGCUCGCC-GGggGCAg -3'
miRNA:   3'- cUAGCCGCC-------CACGAGCGGuCCuuUGU- -5'
19600 3' -57.2 NC_004686.1 + 26677 1.08 0.000713
Target:  5'- cGAUCGGCGGGUGCUCGCCAGGAAACAc -3'
miRNA:   3'- -CUAGCCGCCCACGAGCGGUCCUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.