miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19600 5' -56 NC_004686.1 + 39110 0.66 0.677161
Target:  5'- aCCGUGcCCUcUGCGucacaGGCUcgaacacgUCGCCGCa -3'
miRNA:   3'- aGGUACaGGA-ACGC-----CUGA--------AGCGGCGc -5'
19600 5' -56 NC_004686.1 + 55272 0.66 0.677161
Target:  5'- aCUugcgGUCCUUGCGGAUUUggugggCGUCgGCGg -3'
miRNA:   3'- aGGua--CAGGAACGCCUGAA------GCGG-CGC- -5'
19600 5' -56 NC_004686.1 + 43691 0.66 0.655431
Target:  5'- --gGUGUUgUUGCGGAUccgUUCGCCGg- -3'
miRNA:   3'- aggUACAGgAACGCCUG---AAGCGGCgc -5'
19600 5' -56 NC_004686.1 + 1540 0.66 0.655431
Target:  5'- -aCAUGUCCccUGaGGACgUUCGUCGUGa -3'
miRNA:   3'- agGUACAGGa-ACgCCUG-AAGCGGCGC- -5'
19600 5' -56 NC_004686.1 + 7195 0.67 0.64453
Target:  5'- gCCAgcGUCCUUGUGGc---CGCCGUGc -3'
miRNA:   3'- aGGUa-CAGGAACGCCugaaGCGGCGC- -5'
19600 5' -56 NC_004686.1 + 13079 0.67 0.64453
Target:  5'- gUCCAUGUCCcggGCaaccgguuuccgGGACUUCuGCuuugCGCGg -3'
miRNA:   3'- -AGGUACAGGaa-CG------------CCUGAAG-CG----GCGC- -5'
19600 5' -56 NC_004686.1 + 10845 0.67 0.611796
Target:  5'- -aCGcGUCCaggGCGG-CUUgCGCCGCGg -3'
miRNA:   3'- agGUaCAGGaa-CGCCuGAA-GCGGCGC- -5'
19600 5' -56 NC_004686.1 + 10889 0.68 0.579217
Target:  5'- uUCCAUGcCCcgGCGGGgUacaCGCCGCc -3'
miRNA:   3'- -AGGUACaGGaaCGCCUgAa--GCGGCGc -5'
19600 5' -56 NC_004686.1 + 30910 0.68 0.579217
Target:  5'- gCCGUGgg--UGUGGACgUUGCCGUGg -3'
miRNA:   3'- aGGUACaggaACGCCUGaAGCGGCGC- -5'
19600 5' -56 NC_004686.1 + 48145 0.68 0.557698
Target:  5'- aUCCgcGUGUCCUggagGCGGugUcgUGCCGg- -3'
miRNA:   3'- -AGG--UACAGGAa---CGCCugAa-GCGGCgc -5'
19600 5' -56 NC_004686.1 + 2086 0.69 0.494764
Target:  5'- cUCCAUGUCggggGCGGugUaUGCgGCGa -3'
miRNA:   3'- -AGGUACAGgaa-CGCCugAaGCGgCGC- -5'
19600 5' -56 NC_004686.1 + 115 0.69 0.494764
Target:  5'- cUCCGUGUgCgUUGCGGA--UCaCCGCGg -3'
miRNA:   3'- -AGGUACA-GgAACGCCUgaAGcGGCGC- -5'
19600 5' -56 NC_004686.1 + 55324 0.69 0.494764
Target:  5'- uUCCGUGUCUgcUGCGGaccaacccGCUUCGuuGaCGg -3'
miRNA:   3'- -AGGUACAGGa-ACGCC--------UGAAGCggC-GC- -5'
19600 5' -56 NC_004686.1 + 39783 0.73 0.281796
Target:  5'- -aCAUGUUCagggauggggucGUGGGCUUCGCCGCGg -3'
miRNA:   3'- agGUACAGGaa----------CGCCUGAAGCGGCGC- -5'
19600 5' -56 NC_004686.1 + 26643 1.1 0.000787
Target:  5'- cUCCAUGUCCUUGCGGACUUCGCCGCGg -3'
miRNA:   3'- -AGGUACAGGAACGCCUGAAGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.