Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19602 | 5' | -54.3 | NC_004686.1 | + | 7665 | 0.66 | 0.776696 |
Target: 5'- aGGGGCGCGagccaucauGGCCGAuucaaAGAAUGUGUg -3' miRNA: 3'- gCUCCGCGUgc-------CUGGCU-----UCUUGUACA- -5' |
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19602 | 5' | -54.3 | NC_004686.1 | + | 27180 | 1.07 | 0.001924 |
Target: 5'- uCGAGGCGCACGGACCGAAGAACAUGUu -3' miRNA: 3'- -GCUCCGCGUGCCUGGCUUCUUGUACA- -5' |
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19602 | 5' | -54.3 | NC_004686.1 | + | 37717 | 0.77 | 0.219627 |
Target: 5'- cCGAGGUGUAcCGGACCGggGcguCGUGg -3' miRNA: 3'- -GCUCCGCGU-GCCUGGCuuCuu-GUACa -5' |
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19602 | 5' | -54.3 | NC_004686.1 | + | 39823 | 0.75 | 0.298357 |
Target: 5'- gGAGGCGCcgucgucgagcagGCGGGCCGccugggccAGGACAUGUu -3' miRNA: 3'- gCUCCGCG-------------UGCCUGGCu-------UCUUGUACA- -5' |
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19602 | 5' | -54.3 | NC_004686.1 | + | 42979 | 0.67 | 0.692547 |
Target: 5'- aCGuGGCGUccaACGGGCUGu-GGGCAUGc -3' miRNA: 3'- -GCuCCGCG---UGCCUGGCuuCUUGUACa -5' |
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19602 | 5' | -54.3 | NC_004686.1 | + | 44161 | 0.67 | 0.735456 |
Target: 5'- aCGcGGUGC-CGGACCGG---GCAUGg -3' miRNA: 3'- -GCuCCGCGuGCCUGGCUucuUGUACa -5' |
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19602 | 5' | -54.3 | NC_004686.1 | + | 55396 | 0.66 | 0.766583 |
Target: 5'- gGAGGCGCACaccuGACCGccgcGGACAa-- -3' miRNA: 3'- gCUCCGCGUGc---CUGGCuu--CUUGUaca -5' |
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19602 | 5' | -54.3 | NC_004686.1 | + | 55986 | 0.68 | 0.681645 |
Target: 5'- gCGGGGCG-GCaGGCUGuuGAGCAUGUc -3' miRNA: 3'- -GCUCCGCgUGcCUGGCuuCUUGUACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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