miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19603 3' -51 NC_004686.1 + 19679 0.66 0.923808
Target:  5'- uCGGUGCCucccucuGCGCGcACAGUGauccUCGAGa -3'
miRNA:   3'- -GCUAUGGuu-----CGCGC-UGUCGU----AGCUUg -5'
19603 3' -51 NC_004686.1 + 31843 0.66 0.91761
Target:  5'- aCGAUAgUCGGGCGUGGCgGGCGUUGu-- -3'
miRNA:   3'- -GCUAU-GGUUCGCGCUG-UCGUAGCuug -5'
19603 3' -51 NC_004686.1 + 32678 0.66 0.91761
Target:  5'- aGAgGCCAAGCuugaagccacCGACGGCAUCaaccuGGACa -3'
miRNA:   3'- gCUaUGGUUCGc---------GCUGUCGUAG-----CUUG- -5'
19603 3' -51 NC_004686.1 + 22167 0.66 0.91761
Target:  5'- uCGAUGCCAcugguuuuuccGGCGgcaaCGGCGGCAaCGGcgGCa -3'
miRNA:   3'- -GCUAUGGU-----------UCGC----GCUGUCGUaGCU--UG- -5'
19603 3' -51 NC_004686.1 + 27107 0.66 0.910455
Target:  5'- uCGGU-CCGuGCGCcucGACGGCGagccagcUCGAACa -3'
miRNA:   3'- -GCUAuGGUuCGCG---CUGUCGU-------AGCUUG- -5'
19603 3' -51 NC_004686.1 + 32784 0.66 0.904338
Target:  5'- aCGGcauCUggGU-CGGCAGCAUCGAAUu -3'
miRNA:   3'- -GCUau-GGuuCGcGCUGUCGUAGCUUG- -5'
19603 3' -51 NC_004686.1 + 8594 0.66 0.904338
Target:  5'- -aGUACCAgaaGGCGuUGGCGGCGUgGGAg -3'
miRNA:   3'- gcUAUGGU---UCGC-GCUGUCGUAgCUUg -5'
19603 3' -51 NC_004686.1 + 43828 0.67 0.889916
Target:  5'- uCGAcGCCGauGGCGCGGCGGCccaGGuuGCg -3'
miRNA:   3'- -GCUaUGGU--UCGCGCUGUCGuagCU--UG- -5'
19603 3' -51 NC_004686.1 + 53402 0.67 0.882285
Target:  5'- gGAgcugGCCcguucGCGUGGCcGCAUCGAAUc -3'
miRNA:   3'- gCUa---UGGuu---CGCGCUGuCGUAGCUUG- -5'
19603 3' -51 NC_004686.1 + 43751 0.67 0.882285
Target:  5'- ---gGCCGccGCGCcauCGGCGUCGAACu -3'
miRNA:   3'- gcuaUGGUu-CGCGcu-GUCGUAGCUUG- -5'
19603 3' -51 NC_004686.1 + 15500 0.67 0.882285
Target:  5'- gCGAUGCCAGucgacuaccuGCG-GAUGGUGUCGAAa -3'
miRNA:   3'- -GCUAUGGUU----------CGCgCUGUCGUAGCUUg -5'
19603 3' -51 NC_004686.1 + 53452 0.67 0.866209
Target:  5'- cCGGUGCCGgauccGGUGCGuCAGCAaCGcuuACa -3'
miRNA:   3'- -GCUAUGGU-----UCGCGCuGUCGUaGCu--UG- -5'
19603 3' -51 NC_004686.1 + 38165 0.67 0.857779
Target:  5'- uCGGUucguucucCCAauGGUGCGGCGGCAggaaCGGGCg -3'
miRNA:   3'- -GCUAu-------GGU--UCGCGCUGUCGUa---GCUUG- -5'
19603 3' -51 NC_004686.1 + 26324 0.68 0.840176
Target:  5'- ---cGCCAAuGCGCacauGAuCGGCAUCGAAUg -3'
miRNA:   3'- gcuaUGGUU-CGCG----CU-GUCGUAGCUUG- -5'
19603 3' -51 NC_004686.1 + 51505 0.68 0.83927
Target:  5'- uGAUGCUcguguggGGGCGUGgaucGCGGCGUgGGACg -3'
miRNA:   3'- gCUAUGG-------UUCGCGC----UGUCGUAgCUUG- -5'
19603 3' -51 NC_004686.1 + 21993 0.68 0.812053
Target:  5'- gCGGUGCCAAgGCGUauuccgguGACGGCAa-GGACg -3'
miRNA:   3'- -GCUAUGGUU-CGCG--------CUGUCGUagCUUG- -5'
19603 3' -51 NC_004686.1 + 21837 0.68 0.812053
Target:  5'- gGcgGCgCGGGCGCgGGCGGCGgcucCGGACg -3'
miRNA:   3'- gCuaUG-GUUCGCG-CUGUCGUa---GCUUG- -5'
19603 3' -51 NC_004686.1 + 2214 0.69 0.802263
Target:  5'- cCGAUGCguuGCGCGACuguucccagacgGGCggCGAGCg -3'
miRNA:   3'- -GCUAUGguuCGCGCUG------------UCGuaGCUUG- -5'
19603 3' -51 NC_004686.1 + 1378 0.69 0.792283
Target:  5'- ---cGCCAcuuccugcgGGCGCGGCGGCGUacccauaaaGAACg -3'
miRNA:   3'- gcuaUGGU---------UCGCGCUGUCGUAg--------CUUG- -5'
19603 3' -51 NC_004686.1 + 6230 0.69 0.761328
Target:  5'- uCGAUACgCGccAGCGCGGCGGguUC-AACc -3'
miRNA:   3'- -GCUAUG-GU--UCGCGCUGUCguAGcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.