miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19604 3' -53.4 NC_004686.1 + 37363 0.66 0.819431
Target:  5'- gAGUGGC-CCuGCGACGuaaGugUUCAg -3'
miRNA:   3'- -UCACCGcGGuUGCUGUucgCugAAGU- -5'
19604 3' -53.4 NC_004686.1 + 36317 0.66 0.819431
Target:  5'- gAGcUGGuCGCCGAgGuuGAGCGGCUg-- -3'
miRNA:   3'- -UC-ACC-GCGGUUgCugUUCGCUGAagu -5'
19604 3' -53.4 NC_004686.1 + 22060 0.66 0.813745
Target:  5'- gGGUGGCGUgucgcucaccgcgaaCGGCGGCcaGGGCGGCa--- -3'
miRNA:   3'- -UCACCGCG---------------GUUGCUG--UUCGCUGaagu -5'
19604 3' -53.4 NC_004686.1 + 9244 0.66 0.809915
Target:  5'- --cGGCGaCCGaucucACGGCcGGCGGCUugUCAg -3'
miRNA:   3'- ucaCCGC-GGU-----UGCUGuUCGCUGA--AGU- -5'
19604 3' -53.4 NC_004686.1 + 3169 0.66 0.790311
Target:  5'- --aGGCGUCGcuuccggauACGGCGguGGCGAUUUCu -3'
miRNA:   3'- ucaCCGCGGU---------UGCUGU--UCGCUGAAGu -5'
19604 3' -53.4 NC_004686.1 + 22249 0.66 0.790311
Target:  5'- --gGGCGCUGGCGGuaaGGGCGGCggCGg -3'
miRNA:   3'- ucaCCGCGGUUGCUg--UUCGCUGaaGU- -5'
19604 3' -53.4 NC_004686.1 + 24528 0.66 0.780248
Target:  5'- uGGUGGCgGCCGcCGcCGcAGCG-CUUCAc -3'
miRNA:   3'- -UCACCG-CGGUuGCuGU-UCGCuGAAGU- -5'
19604 3' -53.4 NC_004686.1 + 19049 0.67 0.749149
Target:  5'- cGGgucgGGUGCUGGcCGGCAGGCGuCUUUg -3'
miRNA:   3'- -UCa---CCGCGGUU-GCUGUUCGCuGAAGu -5'
19604 3' -53.4 NC_004686.1 + 3657 0.67 0.73852
Target:  5'- cGUGGCGCCAuuguuCGACcGGuCGA--UCAg -3'
miRNA:   3'- uCACCGCGGUu----GCUGuUC-GCUgaAGU- -5'
19604 3' -53.4 NC_004686.1 + 21836 0.67 0.72778
Target:  5'- cGGcGGCGCgGGCG-CGGGCGGCg--- -3'
miRNA:   3'- -UCaCCGCGgUUGCuGUUCGCUGaagu -5'
19604 3' -53.4 NC_004686.1 + 22186 0.67 0.716941
Target:  5'- --cGGCGgCAACGGCGgcaacGGCGGCagCAg -3'
miRNA:   3'- ucaCCGCgGUUGCUGU-----UCGCUGaaGU- -5'
19604 3' -53.4 NC_004686.1 + 15929 0.67 0.716941
Target:  5'- cGGUGGUGUCGuCGGCGAaCGACUg-- -3'
miRNA:   3'- -UCACCGCGGUuGCUGUUcGCUGAagu -5'
19604 3' -53.4 NC_004686.1 + 53103 0.67 0.716941
Target:  5'- gAGUGaGCGucugguCCAGgGugGGGUGGCUUCGa -3'
miRNA:   3'- -UCAC-CGC------GGUUgCugUUCGCUGAAGU- -5'
19604 3' -53.4 NC_004686.1 + 42184 0.68 0.706015
Target:  5'- --cGGUGUCGAUGGCAcGCugGGCUUCAu -3'
miRNA:   3'- ucaCCGCGGUUGCUGUuCG--CUGAAGU- -5'
19604 3' -53.4 NC_004686.1 + 12070 0.68 0.68395
Target:  5'- --aGGCGaUCAACGGucugaucgacCAGGCGGCUUCu -3'
miRNA:   3'- ucaCCGC-GGUUGCU----------GUUCGCUGAAGu -5'
19604 3' -53.4 NC_004686.1 + 22123 0.69 0.650495
Target:  5'- cAGUGGCGCgcGCGGCcucGGCGGCa--- -3'
miRNA:   3'- -UCACCGCGguUGCUGu--UCGCUGaagu -5'
19604 3' -53.4 NC_004686.1 + 12149 0.69 0.643776
Target:  5'- --cGGCGCCGGCGGuCAggccgcggggccagcGGCGGCgUUCGc -3'
miRNA:   3'- ucaCCGCGGUUGCU-GU---------------UCGCUG-AAGU- -5'
19604 3' -53.4 NC_004686.1 + 26097 0.69 0.639295
Target:  5'- gGGUGGCagaacuCCGGCcAC-GGCGACUUCAa -3'
miRNA:   3'- -UCACCGc-----GGUUGcUGuUCGCUGAAGU- -5'
19604 3' -53.4 NC_004686.1 + 9877 0.7 0.561259
Target:  5'- cAGUGGggaCGCCGGCGGCGaccgcAGUGGCggCAg -3'
miRNA:   3'- -UCACC---GCGGUUGCUGU-----UCGCUGaaGU- -5'
19604 3' -53.4 NC_004686.1 + 13368 0.71 0.517763
Target:  5'- -aUGGCGUCGAC-ACGuGCGGCUUCu -3'
miRNA:   3'- ucACCGCGGUUGcUGUuCGCUGAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.