miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19604 5' -59.4 NC_004686.1 + 47180 0.66 0.470083
Target:  5'- gAUCA-AGCAaccuCACCGCCGGCGAaGCg -3'
miRNA:   3'- -UGGUcUCGUc---GUGGCGGUCGCUaCGa -5'
19604 5' -59.4 NC_004686.1 + 9791 0.66 0.460174
Target:  5'- cGCCAcuGCGGuCGCCGCCGGCGu---- -3'
miRNA:   3'- -UGGUcuCGUC-GUGGCGGUCGCuacga -5'
19604 5' -59.4 NC_004686.1 + 54741 0.66 0.460173
Target:  5'- cACCAGAauGCAGCcggGCCGCa---GAUGCg -3'
miRNA:   3'- -UGGUCU--CGUCG---UGGCGgucgCUACGa -5'
19604 5' -59.4 NC_004686.1 + 56141 0.66 0.450376
Target:  5'- cACCGGucgcGGguGCcgaACCGCCAGgCGAcGCg -3'
miRNA:   3'- -UGGUC----UCguCG---UGGCGGUC-GCUaCGa -5'
19604 5' -59.4 NC_004686.1 + 39921 0.66 0.450376
Target:  5'- cGCCAuucAGC-GCACUGCCGGCGGUcccaGCc -3'
miRNA:   3'- -UGGUc--UCGuCGUGGCGGUCGCUA----CGa -5'
19604 5' -59.4 NC_004686.1 + 12558 0.66 0.431133
Target:  5'- uGCgGGGGUAgGCGCCcccggucCCGGCGGUGCc -3'
miRNA:   3'- -UGgUCUCGU-CGUGGc------GGUCGCUACGa -5'
19604 5' -59.4 NC_004686.1 + 39826 0.66 0.431133
Target:  5'- cCCGGucGUGGCugggACCGCCGGCaGUGCg -3'
miRNA:   3'- uGGUCu-CGUCG----UGGCGGUCGcUACGa -5'
19604 5' -59.4 NC_004686.1 + 21972 0.66 0.431133
Target:  5'- cGCgCGGAcuCGGCGgCGCUGGCGGUGCc -3'
miRNA:   3'- -UG-GUCUc-GUCGUgGCGGUCGCUACGa -5'
19604 5' -59.4 NC_004686.1 + 12554 0.67 0.421693
Target:  5'- cCCGGAGCAG-ACCGaCUGGUGgcGCa -3'
miRNA:   3'- uGGUCUCGUCgUGGC-GGUCGCuaCGa -5'
19604 5' -59.4 NC_004686.1 + 22136 0.67 0.421693
Target:  5'- gGCCucGGCGGCACCGCUgucaucaccGGCcucGAUGCc -3'
miRNA:   3'- -UGGucUCGUCGUGGCGG---------UCG---CUACGa -5'
19604 5' -59.4 NC_004686.1 + 15658 0.67 0.403193
Target:  5'- cCCGGAGCcGaaucCUGCCcGCGAUGCg -3'
miRNA:   3'- uGGUCUCGuCgu--GGCGGuCGCUACGa -5'
19604 5' -59.4 NC_004686.1 + 33757 0.67 0.403193
Target:  5'- cGCCGGcGGgAGCACCGCaugaAGCGGaagGCc -3'
miRNA:   3'- -UGGUC-UCgUCGUGGCGg---UCGCUa--CGa -5'
19604 5' -59.4 NC_004686.1 + 22568 0.67 0.394138
Target:  5'- cACCGGuGaCGGUcaucGCCGCCggGGCGggGCUg -3'
miRNA:   3'- -UGGUCuC-GUCG----UGGCGG--UCGCuaCGA- -5'
19604 5' -59.4 NC_004686.1 + 22226 0.67 0.376428
Target:  5'- gGCCAGAGCAGaACCaaCGGCGcggGCg -3'
miRNA:   3'- -UGGUCUCGUCgUGGcgGUCGCua-CGa -5'
19604 5' -59.4 NC_004686.1 + 12456 0.68 0.326602
Target:  5'- cAUCAGGGCaauggGGCACCGCCGGgacCGGggGCg -3'
miRNA:   3'- -UGGUCUCG-----UCGUGGCGGUC---GCUa-CGa -5'
19604 5' -59.4 NC_004686.1 + 12769 0.69 0.281837
Target:  5'- --aGGuGCAGCGCCGCgaAGCGAUGaCUc -3'
miRNA:   3'- uggUCuCGUCGUGGCGg-UCGCUAC-GA- -5'
19604 5' -59.4 NC_004686.1 + 10840 0.7 0.242078
Target:  5'- uCCAGGGCGGCuugcGCCGCgGG-GGUGCc -3'
miRNA:   3'- uGGUCUCGUCG----UGGCGgUCgCUACGa -5'
19604 5' -59.4 NC_004686.1 + 28089 0.7 0.241456
Target:  5'- gACUGGAaaGCcacguugAGCAUCGCUGGCGGUGCUg -3'
miRNA:   3'- -UGGUCU--CG-------UCGUGGCGGUCGCUACGA- -5'
19604 5' -59.4 NC_004686.1 + 53229 0.72 0.181374
Target:  5'- aACCGcacAGCAGCACCGacaCCAGCaGGUGCa -3'
miRNA:   3'- -UGGUc--UCGUCGUGGC---GGUCG-CUACGa -5'
19604 5' -59.4 NC_004686.1 + 40739 0.73 0.150125
Target:  5'- aGCCGGuGCGGCugCGCUugaugacgcGCGGUGCg -3'
miRNA:   3'- -UGGUCuCGUCGugGCGGu--------CGCUACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.