miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19605 3' -55 NC_004686.1 + 15706 0.65 0.771625
Target:  5'- nCAGCAGGCCGaaguguuccGCGAACugCaG-CGGCu -3'
miRNA:   3'- -GUCGUCUGGC---------CGCUUGugG-CaGUUGc -5'
19605 3' -55 NC_004686.1 + 5160 0.66 0.761506
Target:  5'- -cGguGACgGgaGCGAACgucGCCGUCGACu -3'
miRNA:   3'- guCguCUGgC--CGCUUG---UGGCAGUUGc -5'
19605 3' -55 NC_004686.1 + 34982 0.66 0.761506
Target:  5'- gGGCuGAUCGGUGAACACgugccgcaCGUUGugGc -3'
miRNA:   3'- gUCGuCUGGCCGCUUGUG--------GCAGUugC- -5'
19605 3' -55 NC_004686.1 + 47565 0.66 0.761506
Target:  5'- gAGCGccGGCUGGCccGCGCUGUCGGuCGg -3'
miRNA:   3'- gUCGU--CUGGCCGcuUGUGGCAGUU-GC- -5'
19605 3' -55 NC_004686.1 + 5930 0.66 0.761506
Target:  5'- uCGGCu-GCCGGCGAAa--CGUgCAGCGg -3'
miRNA:   3'- -GUCGucUGGCCGCUUgugGCA-GUUGC- -5'
19605 3' -55 NC_004686.1 + 10033 0.66 0.761506
Target:  5'- uCGGCAacccacGAUCGGCGAGCAucugcagaUCGUCAGu- -3'
miRNA:   3'- -GUCGU------CUGGCCGCUUGU--------GGCAGUUgc -5'
19605 3' -55 NC_004686.1 + 4704 0.66 0.760487
Target:  5'- -cGCAGACCgcgccgcggagcaGGCGAAUGCCGagGcCGa -3'
miRNA:   3'- guCGUCUGG-------------CCGCUUGUGGCagUuGC- -5'
19605 3' -55 NC_004686.1 + 51674 0.66 0.751256
Target:  5'- gCAGCGGAauGGCuuGAACACCGcgagaaggaaCGACGg -3'
miRNA:   3'- -GUCGUCUggCCG--CUUGUGGCa---------GUUGC- -5'
19605 3' -55 NC_004686.1 + 9355 0.66 0.751256
Target:  5'- aGGCGGAgUCGGCGuccCGCCGUUccgGGCa -3'
miRNA:   3'- gUCGUCU-GGCCGCuu-GUGGCAG---UUGc -5'
19605 3' -55 NC_004686.1 + 5186 0.66 0.751256
Target:  5'- -uGCAGACCauGGCGGAC-CUGUC--CGg -3'
miRNA:   3'- guCGUCUGG--CCGCUUGuGGCAGuuGC- -5'
19605 3' -55 NC_004686.1 + 43120 0.66 0.751255
Target:  5'- cCAGCcu-UCGGCGAACGCUuGUguGCGg -3'
miRNA:   3'- -GUCGucuGGCCGCUUGUGG-CAguUGC- -5'
19605 3' -55 NC_004686.1 + 55092 0.66 0.751255
Target:  5'- -cGCuu-UCGGUGAACACCagaacGUCAGCGu -3'
miRNA:   3'- guCGucuGGCCGCUUGUGG-----CAGUUGC- -5'
19605 3' -55 NC_004686.1 + 9254 0.66 0.750224
Target:  5'- gAGguGGCCGGUggcuaacggaacuGAACugGCCGUCGccuACGu -3'
miRNA:   3'- gUCguCUGGCCG-------------CUUG--UGGCAGU---UGC- -5'
19605 3' -55 NC_004686.1 + 38118 0.66 0.740885
Target:  5'- gAGCAGAUgaaCGGCGA-UGCCGUUGuCGg -3'
miRNA:   3'- gUCGUCUG---GCCGCUuGUGGCAGUuGC- -5'
19605 3' -55 NC_004686.1 + 44461 0.66 0.737752
Target:  5'- --cCGGaACCGGCGAacggauccgcaaccACACCGUCGGg- -3'
miRNA:   3'- gucGUC-UGGCCGCU--------------UGUGGCAGUUgc -5'
19605 3' -55 NC_004686.1 + 909 0.66 0.719828
Target:  5'- gCGGCAGGCCGGCaaaacguGgGgUGUCAugGu -3'
miRNA:   3'- -GUCGUCUGGCCGcu-----UgUgGCAGUugC- -5'
19605 3' -55 NC_004686.1 + 9511 0.66 0.719828
Target:  5'- gGGagaAGAUCGGC-AACGCUGUCGgaACGg -3'
miRNA:   3'- gUCg--UCUGGCCGcUUGUGGCAGU--UGC- -5'
19605 3' -55 NC_004686.1 + 33658 0.67 0.709165
Target:  5'- aGGguG-CgGGCGAACACCGggccUAACa -3'
miRNA:   3'- gUCguCuGgCCGCUUGUGGCa---GUUGc -5'
19605 3' -55 NC_004686.1 + 52686 0.67 0.709165
Target:  5'- -cGCGGGCgaGGCGAACGuuGUgGAgGg -3'
miRNA:   3'- guCGUCUGg-CCGCUUGUggCAgUUgC- -5'
19605 3' -55 NC_004686.1 + 2538 0.67 0.709165
Target:  5'- gCAGCAcGGuCCGGCGuuccugauuAACACUGUUggUGa -3'
miRNA:   3'- -GUCGU-CU-GGCCGC---------UUGUGGCAGuuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.