miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19605 5' -51 NC_004686.1 + 21317 0.66 0.928337
Target:  5'- -aCGUCAAUCCGUAcgCcGUGGccCAGg -3'
miRNA:   3'- cgGCGGUUGGGCAUuaGuUACCa-GUC- -5'
19605 5' -51 NC_004686.1 + 18504 0.66 0.927755
Target:  5'- uGCCGCCAagucggaGCCgauuggUGUGAUCGGcUGGcUCGGc -3'
miRNA:   3'- -CGGCGGU-------UGG------GCAUUAGUU-ACC-AGUC- -5'
19605 5' -51 NC_004686.1 + 4961 0.66 0.922386
Target:  5'- uCCGUCcuGGCCCGccuGUCGAUGGccgagcUCAGg -3'
miRNA:   3'- cGGCGG--UUGGGCau-UAGUUACC------AGUC- -5'
19605 5' -51 NC_004686.1 + 19546 0.66 0.922386
Target:  5'- cGCCGCCGACgCCGccggAAaCGguuGUGGUgGGc -3'
miRNA:   3'- -CGGCGGUUG-GGCa---UUaGU---UACCAgUC- -5'
19605 5' -51 NC_004686.1 + 39738 0.66 0.916142
Target:  5'- uGCCGCacccucACCCGUGA-CAcugugcGGUCGGa -3'
miRNA:   3'- -CGGCGgu----UGGGCAUUaGUua----CCAGUC- -5'
19605 5' -51 NC_004686.1 + 15985 0.66 0.916142
Target:  5'- gGCCgGCCAguACCCGaGAaguUCGGUGGUg-- -3'
miRNA:   3'- -CGG-CGGU--UGGGCaUU---AGUUACCAguc -5'
19605 5' -51 NC_004686.1 + 6817 0.66 0.909609
Target:  5'- uGCCGCCAACCCcaccgaacgGUGAccCAGUGaaGUCu- -3'
miRNA:   3'- -CGGCGGUUGGG---------CAUUa-GUUAC--CAGuc -5'
19605 5' -51 NC_004686.1 + 27664 0.66 0.909609
Target:  5'- aCCGaaAACUCGUgGGUCGGUGGUCc- -3'
miRNA:   3'- cGGCggUUGGGCA-UUAGUUACCAGuc -5'
19605 5' -51 NC_004686.1 + 915 0.66 0.909609
Target:  5'- gGCCGgCAAaaCGUGggguGUC-AUGGUCGGg -3'
miRNA:   3'- -CGGCgGUUggGCAU----UAGuUACCAGUC- -5'
19605 5' -51 NC_004686.1 + 23218 0.66 0.909609
Target:  5'- uGCCcCCGAgCCGUAGU---UGGUCAc -3'
miRNA:   3'- -CGGcGGUUgGGCAUUAguuACCAGUc -5'
19605 5' -51 NC_004686.1 + 53622 0.66 0.909609
Target:  5'- cGCUGCCGGCCgGUuuGGUUGcgGGUUc- -3'
miRNA:   3'- -CGGCGGUUGGgCA--UUAGUuaCCAGuc -5'
19605 5' -51 NC_004686.1 + 52516 0.67 0.888295
Target:  5'- uUCGCCAuuucGCCCGcaccauUCAAUGGUUg- -3'
miRNA:   3'- cGGCGGU----UGGGCauu---AGUUACCAGuc -5'
19605 5' -51 NC_004686.1 + 47568 0.67 0.880633
Target:  5'- cGCCgGCUGGCCCGcgcuGUCGGUcgGGUCGc -3'
miRNA:   3'- -CGG-CGGUUGGGCau--UAGUUA--CCAGUc -5'
19605 5' -51 NC_004686.1 + 47309 0.67 0.880633
Target:  5'- cGCCGCCuacGACCCGUGGUUuccg--CAGc -3'
miRNA:   3'- -CGGCGG---UUGGGCAUUAGuuaccaGUC- -5'
19605 5' -51 NC_004686.1 + 21565 0.67 0.880633
Target:  5'- cGuuGCCugcCCCGUugaaGAUCAcugggGGUCAGc -3'
miRNA:   3'- -CggCGGuu-GGGCA----UUAGUua---CCAGUC- -5'
19605 5' -51 NC_004686.1 + 9489 0.67 0.872701
Target:  5'- cCCGcCCAACCCGUuccCGAUGGa--- -3'
miRNA:   3'- cGGC-GGUUGGGCAuuaGUUACCaguc -5'
19605 5' -51 NC_004686.1 + 9162 0.67 0.864506
Target:  5'- aGCCGCCGGCC-GUGA--GAUcGGUCGc -3'
miRNA:   3'- -CGGCGGUUGGgCAUUagUUA-CCAGUc -5'
19605 5' -51 NC_004686.1 + 16606 0.68 0.829257
Target:  5'- aGCCuGuUCGAUCCGUuGUCGuggGUGGUCGGu -3'
miRNA:   3'- -CGG-C-GGUUGGGCAuUAGU---UACCAGUC- -5'
19605 5' -51 NC_004686.1 + 13575 0.68 0.819873
Target:  5'- aUCGUCAACCCGccAUCGGUGGg--- -3'
miRNA:   3'- cGGCGGUUGGGCauUAGUUACCaguc -5'
19605 5' -51 NC_004686.1 + 56037 0.69 0.810281
Target:  5'- cCCGCCAACCCGgccgcGUCGccUGG-CGGu -3'
miRNA:   3'- cGGCGGUUGGGCau---UAGUu-ACCaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.