miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19606 3' -54.7 NC_004686.1 + 15677 0.66 0.774991
Target:  5'- cGCG-AUGCG-GUGGcccggcUGaCGCCGCA-GCa -3'
miRNA:   3'- -CGCaUACGCuCAUC------AC-GCGGCGUgCG- -5'
19606 3' -54.7 NC_004686.1 + 47550 0.66 0.764889
Target:  5'- cGUG-AUGCgGAGuUGGaGCGCCGgCugGCc -3'
miRNA:   3'- -CGCaUACG-CUC-AUCaCGCGGC-GugCG- -5'
19606 3' -54.7 NC_004686.1 + 19284 0.66 0.74429
Target:  5'- gGCG-GUGCGGGUGGUGauUCGCuCGg -3'
miRNA:   3'- -CGCaUACGCUCAUCACgcGGCGuGCg -5'
19606 3' -54.7 NC_004686.1 + 39129 0.66 0.733815
Target:  5'- uGCGgugGCGAGUucaUGgGCaCGUAUGCg -3'
miRNA:   3'- -CGCauaCGCUCAuc-ACgCG-GCGUGCG- -5'
19606 3' -54.7 NC_004686.1 + 52989 0.67 0.691011
Target:  5'- gGCGaucaggcgGCGAGccaUGCGCCGCAUGa -3'
miRNA:   3'- -CGCaua-----CGCUCaucACGCGGCGUGCg -5'
19606 3' -54.7 NC_004686.1 + 47285 0.67 0.688841
Target:  5'- cGCGgccaaugcucuUGCGA--AGUGCGCCGCcuACGa -3'
miRNA:   3'- -CGCau---------ACGCUcaUCACGCGGCG--UGCg -5'
19606 3' -54.7 NC_004686.1 + 4082 0.68 0.614331
Target:  5'- aCGcac-CGGGccgGGUGCGCCGCAUGUa -3'
miRNA:   3'- cGCauacGCUCa--UCACGCGGCGUGCG- -5'
19606 3' -54.7 NC_004686.1 + 24267 0.69 0.601168
Target:  5'- uGCGUaacaugGUGCGGGccuccuguugggGGUGgGCCGcCugGCg -3'
miRNA:   3'- -CGCA------UACGCUCa-----------UCACgCGGC-GugCG- -5'
19606 3' -54.7 NC_004686.1 + 56098 0.69 0.5815
Target:  5'- gGCGggugccggGCGGGUGGgcgacgGUGCCGUuguCGCu -3'
miRNA:   3'- -CGCaua-----CGCUCAUCa-----CGCGGCGu--GCG- -5'
19606 3' -54.7 NC_004686.1 + 27862 0.69 0.570629
Target:  5'- cCGaAUGCGGuUGGUGCGCCgGCACc- -3'
miRNA:   3'- cGCaUACGCUcAUCACGCGG-CGUGcg -5'
19606 3' -54.7 NC_004686.1 + 19041 0.71 0.465836
Target:  5'- gGUGUggGCGGGUcgGGUGCugGCCgGCAgGCg -3'
miRNA:   3'- -CGCAuaCGCUCA--UCACG--CGG-CGUgCG- -5'
19606 3' -54.7 NC_004686.1 + 27485 0.72 0.426735
Target:  5'- -aGUcgGCGAgccgGUAGUGCaGCgGCGCGUu -3'
miRNA:   3'- cgCAuaCGCU----CAUCACG-CGgCGUGCG- -5'
19606 3' -54.7 NC_004686.1 + 29290 1.14 0.000527
Target:  5'- uGCGUAUGCGAGUAGUGCGCCGCACGCa -3'
miRNA:   3'- -CGCAUACGCUCAUCACGCGGCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.