miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19606 5' -54.8 NC_004686.1 + 7211 0.66 0.749301
Target:  5'- gCAGCGACGCUggUACGCCagcguCCuuGUGGCc -3'
miRNA:   3'- -GUCGUUGUGG--GUGUGGg----GGugUAUCG- -5'
19606 5' -54.8 NC_004686.1 + 16701 0.66 0.749301
Target:  5'- cCGGCAGCACCgAcCACCCaCgACAa--- -3'
miRNA:   3'- -GUCGUUGUGGgU-GUGGG-GgUGUaucg -5'
19606 5' -54.8 NC_004686.1 + 31683 0.66 0.749301
Target:  5'- -cGCAGCACCguCGCCgCCGUAUGccGCg -3'
miRNA:   3'- guCGUUGUGGguGUGGgGGUGUAU--CG- -5'
19606 5' -54.8 NC_004686.1 + 1291 0.66 0.749301
Target:  5'- uGGguACGCcgCCGCGCCCgCAggaaGUGGCg -3'
miRNA:   3'- gUCguUGUG--GGUGUGGGgGUg---UAUCG- -5'
19606 5' -54.8 NC_004686.1 + 24687 0.66 0.738766
Target:  5'- aGGCAACugCCGCugAUCCCCGuCGUc-- -3'
miRNA:   3'- gUCGUUGugGGUG--UGGGGGU-GUAucg -5'
19606 5' -54.8 NC_004686.1 + 39622 0.66 0.738766
Target:  5'- gAGUuucGCGCCCcgccucaugcgACACCCCU--GUAGCg -3'
miRNA:   3'- gUCGu--UGUGGG-----------UGUGGGGGugUAUCG- -5'
19606 5' -54.8 NC_004686.1 + 43078 0.66 0.728121
Target:  5'- gCGGUGACAagcaCCGCAUgCCCAC--AGCc -3'
miRNA:   3'- -GUCGUUGUg---GGUGUGgGGGUGuaUCG- -5'
19606 5' -54.8 NC_004686.1 + 35208 0.66 0.728121
Target:  5'- aCGGCAACACCUcaugaguCAUCCaCCGCuugaacGGCu -3'
miRNA:   3'- -GUCGUUGUGGGu------GUGGG-GGUGua----UCG- -5'
19606 5' -54.8 NC_004686.1 + 576 0.66 0.728121
Target:  5'- aCGGUAACgaAUCUGCGCCUCCGCc-AGCu -3'
miRNA:   3'- -GUCGUUG--UGGGUGUGGGGGUGuaUCG- -5'
19606 5' -54.8 NC_004686.1 + 32031 0.66 0.728121
Target:  5'- aCGGCcACACCCcaucCACCgcuuuCCCACAgccauGCg -3'
miRNA:   3'- -GUCGuUGUGGGu---GUGG-----GGGUGUau---CG- -5'
19606 5' -54.8 NC_004686.1 + 36886 0.66 0.728121
Target:  5'- gGGCG--AUCCACGuCUCCCACGgcGCg -3'
miRNA:   3'- gUCGUugUGGGUGU-GGGGGUGUauCG- -5'
19606 5' -54.8 NC_004686.1 + 39695 0.66 0.706551
Target:  5'- gCGGCGAaGCCCACgACCCCaucccugaACAUguccuGGCc -3'
miRNA:   3'- -GUCGUUgUGGGUG-UGGGGg-------UGUA-----UCG- -5'
19606 5' -54.8 NC_004686.1 + 18292 0.66 0.706551
Target:  5'- uCAGCAauauugccaGCACCCAaagaCCCCAaaauguUGGCa -3'
miRNA:   3'- -GUCGU---------UGUGGGUgug-GGGGUgu----AUCG- -5'
19606 5' -54.8 NC_004686.1 + 25987 0.66 0.706551
Target:  5'- cCGGCAAUA-UCACACCCCCGaaggAGa -3'
miRNA:   3'- -GUCGUUGUgGGUGUGGGGGUgua-UCg -5'
19606 5' -54.8 NC_004686.1 + 31298 0.66 0.695648
Target:  5'- aCGGCA--ACCUGCGCgCCCGCA--GCg -3'
miRNA:   3'- -GUCGUugUGGGUGUGgGGGUGUauCG- -5'
19606 5' -54.8 NC_004686.1 + 52346 0.67 0.684684
Target:  5'- -uGCAACGCUgGCugCCUCAC-UGGa -3'
miRNA:   3'- guCGUUGUGGgUGugGGGGUGuAUCg -5'
19606 5' -54.8 NC_004686.1 + 56001 0.67 0.684684
Target:  5'- aCAGCGacaacgGCACCguCGCCcaCCCGCccGGCa -3'
miRNA:   3'- -GUCGU------UGUGGguGUGG--GGGUGuaUCG- -5'
19606 5' -54.8 NC_004686.1 + 12987 0.67 0.684684
Target:  5'- aCAGCuccGACACCC-CACCCUCGgAcAGa -3'
miRNA:   3'- -GUCG---UUGUGGGuGUGGGGGUgUaUCg -5'
19606 5' -54.8 NC_004686.1 + 21087 0.67 0.673667
Target:  5'- gCAGCAGCgaaacuACCCGuacCGCCCCCAauaccAGUg -3'
miRNA:   3'- -GUCGUUG------UGGGU---GUGGGGGUgua--UCG- -5'
19606 5' -54.8 NC_004686.1 + 33960 0.67 0.662611
Target:  5'- aGGCGAaguCAUCCuCGCCCUCGCGgccGGCc -3'
miRNA:   3'- gUCGUU---GUGGGuGUGGGGGUGUa--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.