miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19607 3' -55.4 NC_004686.1 + 43387 0.66 0.742638
Target:  5'- gGGCGAUCGgcaggcaaUCGugUuugGGGaUCUCAUGu -3'
miRNA:   3'- aCCGCUGGU--------AGCugG---CCCaAGAGUAC- -5'
19607 3' -55.4 NC_004686.1 + 21799 0.66 0.732183
Target:  5'- cGGCGACC---GACgGGGUUcCUCcaGUGa -3'
miRNA:   3'- aCCGCUGGuagCUGgCCCAA-GAG--UAC- -5'
19607 3' -55.4 NC_004686.1 + 8291 0.66 0.689485
Target:  5'- cGuuGACgc-CGGCCGGGUUCUCcgGa -3'
miRNA:   3'- aCcgCUGguaGCUGGCCCAAGAGuaC- -5'
19607 3' -55.4 NC_004686.1 + 38129 0.67 0.678646
Target:  5'- cGGCGauGCCGUUG-UCGGGUUgCUgCGUGa -3'
miRNA:   3'- aCCGC--UGGUAGCuGGCCCAA-GA-GUAC- -5'
19607 3' -55.4 NC_004686.1 + 39465 0.67 0.667763
Target:  5'- cGGCGcauuuCCG-CGGCCaGGGUUggaCUCGUGa -3'
miRNA:   3'- aCCGCu----GGUaGCUGG-CCCAA---GAGUAC- -5'
19607 3' -55.4 NC_004686.1 + 27418 0.67 0.645909
Target:  5'- cGGCucGCCGacuUCcGCCGGGgUCUCAUGu -3'
miRNA:   3'- aCCGc-UGGU---AGcUGGCCCaAGAGUAC- -5'
19607 3' -55.4 NC_004686.1 + 14870 0.67 0.645909
Target:  5'- aGGCGGCCuUUGACaucuuGGGUggUCUCGc- -3'
miRNA:   3'- aCCGCUGGuAGCUGg----CCCA--AGAGUac -5'
19607 3' -55.4 NC_004686.1 + 12352 0.68 0.624005
Target:  5'- cGGCGGCCAcgaCGACCGGuGagCagAUGg -3'
miRNA:   3'- aCCGCUGGUa--GCUGGCC-CaaGagUAC- -5'
19607 3' -55.4 NC_004686.1 + 56116 0.68 0.591224
Target:  5'- aGGCGACg--CGGCCGGGUUggCGg- -3'
miRNA:   3'- aCCGCUGguaGCUGGCCCAAgaGUac -5'
19607 3' -55.4 NC_004686.1 + 22036 0.68 0.569526
Target:  5'- cGGCGGCgCGUCGACauucaccuCGGGUgg-CGUGu -3'
miRNA:   3'- aCCGCUG-GUAGCUG--------GCCCAagaGUAC- -5'
19607 3' -55.4 NC_004686.1 + 1473 0.71 0.435792
Target:  5'- cUGGCGGaggucaauCCGUCGuuCGGGUUC-CGUGu -3'
miRNA:   3'- -ACCGCU--------GGUAGCugGCCCAAGaGUAC- -5'
19607 3' -55.4 NC_004686.1 + 30506 1.09 0.001007
Target:  5'- gUGGCGACCAUCGACCGGGUUCUCAUGg -3'
miRNA:   3'- -ACCGCUGGUAGCUGGCCCAAGAGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.