miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19607 5' -54.6 NC_004686.1 + 19405 0.66 0.789814
Target:  5'- aCGguUCCGGGUaACCacGGCCGAUCGg- -3'
miRNA:   3'- -GUguAGGCUCA-UGGa-CUGGCUGGCac -5'
19607 5' -54.6 NC_004686.1 + 39186 0.66 0.779958
Target:  5'- gCGCAgaggUgGGGcGCaUGACCGGCCGUGu -3'
miRNA:   3'- -GUGUa---GgCUCaUGgACUGGCUGGCAC- -5'
19607 5' -54.6 NC_004686.1 + 29883 0.66 0.749523
Target:  5'- ----cCCGguuGGUACCUGcGCCGcACCGUGu -3'
miRNA:   3'- guguaGGC---UCAUGGAC-UGGC-UGGCAC- -5'
19607 5' -54.6 NC_004686.1 + 16781 0.67 0.728621
Target:  5'- uCGCcUCCGGGUugUUGACCGGacaUCGg- -3'
miRNA:   3'- -GUGuAGGCUCAugGACUGGCU---GGCac -5'
19607 5' -54.6 NC_004686.1 + 40100 0.67 0.728621
Target:  5'- gGCAUCUucGgcgGCCUGuCCGAgCGUGa -3'
miRNA:   3'- gUGUAGGcuCa--UGGACuGGCUgGCAC- -5'
19607 5' -54.6 NC_004686.1 + 47279 0.67 0.696579
Target:  5'- -cCAUCCGAGgACCUucgcuucGCCGGCgGUGa -3'
miRNA:   3'- guGUAGGCUCaUGGAc------UGGCUGgCAC- -5'
19607 5' -54.6 NC_004686.1 + 23971 0.67 0.685759
Target:  5'- -uCggCCGGGUACCUGGCUGuaugccuucACUGUGu -3'
miRNA:   3'- guGuaGGCUCAUGGACUGGC---------UGGCAC- -5'
19607 5' -54.6 NC_004686.1 + 15908 0.67 0.685759
Target:  5'- aACuUCuCGGGUA-CUGGCCGGCCGcUGa -3'
miRNA:   3'- gUGuAG-GCUCAUgGACUGGCUGGC-AC- -5'
19607 5' -54.6 NC_004686.1 + 37704 0.68 0.661792
Target:  5'- gGCAUCCGuaauuccgagguGUACCgGACCGGggcgUCGUGg -3'
miRNA:   3'- gUGUAGGCu-----------CAUGGaCUGGCU----GGCAC- -5'
19607 5' -54.6 NC_004686.1 + 6077 0.71 0.491756
Target:  5'- gCGCGUCaCGGGUcgcgccauGCCUGGCCG-CCGa- -3'
miRNA:   3'- -GUGUAG-GCUCA--------UGGACUGGCuGGCac -5'
19607 5' -54.6 NC_004686.1 + 30472 1.08 0.001638
Target:  5'- aCACAUCCGAGUACCUGACCGACCGUGc -3'
miRNA:   3'- -GUGUAGGCUCAUGGACUGGCUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.