miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19609 3' -55.3 NC_004686.1 + 38002 0.66 0.71921
Target:  5'- gUGGUUGuCCCCA---CCAUGAGGGu- -3'
miRNA:   3'- gACCGAC-GGGGUgcaGGUAUUCCUug -5'
19609 3' -55.3 NC_004686.1 + 12301 0.66 0.673368
Target:  5'- gCUGGCUGUCCacggaugugacaGCGUucuugCCGcAAGGGGCg -3'
miRNA:   3'- -GACCGACGGGg-----------UGCA-----GGUaUUCCUUG- -5'
19609 3' -55.3 NC_004686.1 + 50613 0.67 0.653459
Target:  5'- -aGGa-GCCCagGCGUCUAUGAGGAc- -3'
miRNA:   3'- gaCCgaCGGGg-UGCAGGUAUUCCUug -5'
19609 3' -55.3 NC_004686.1 + 44155 0.67 0.641256
Target:  5'- -cGGCUGCUgguuucuCCACGccCCAUuccuGGAGCg -3'
miRNA:   3'- gaCCGACGG-------GGUGCa-GGUAuu--CCUUG- -5'
19609 3' -55.3 NC_004686.1 + 27407 0.67 0.620162
Target:  5'- cCUGGgaGaacccgaucccaCCCCACGggguUCCAggAGGGAACg -3'
miRNA:   3'- -GACCgaC------------GGGGUGC----AGGUa-UUCCUUG- -5'
19609 3' -55.3 NC_004686.1 + 9069 0.67 0.620162
Target:  5'- -gGcGCUGUCCC-CGUUCGguGGGAGCc -3'
miRNA:   3'- gaC-CGACGGGGuGCAGGUauUCCUUG- -5'
19609 3' -55.3 NC_004686.1 + 1606 0.69 0.521808
Target:  5'- -cGGUUGUUCCGCGggaCCAgu-GGAACa -3'
miRNA:   3'- gaCCGACGGGGUGCa--GGUauuCCUUG- -5'
19609 3' -55.3 NC_004686.1 + 15612 0.69 0.506986
Target:  5'- aCUGGCUGaCCUCACcugggacguggguUCCGgugGAGGAACc -3'
miRNA:   3'- -GACCGAC-GGGGUGc------------AGGUa--UUCCUUG- -5'
19609 3' -55.3 NC_004686.1 + 25586 0.74 0.257923
Target:  5'- -gGGCUGCCCgCAUGgcuucuUCCAUAuGGGGCa -3'
miRNA:   3'- gaCCGACGGG-GUGC------AGGUAUuCCUUG- -5'
19609 3' -55.3 NC_004686.1 + 32607 1.11 0.000671
Target:  5'- aCUGGCUGCCCCACGUCCAUAAGGAACg -3'
miRNA:   3'- -GACCGACGGGGUGCAGGUAUUCCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.