miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19609 5' -58.3 NC_004686.1 + 54296 0.66 0.589971
Target:  5'- uCCGCgGCgUACUGGcugccacuGAUgugGCGGGUACa -3'
miRNA:   3'- -GGUGgUGgAUGGCC--------CUGa--UGCCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 1379 0.66 0.589971
Target:  5'- aCGCCACUUcCUGcGGGCgcgGCGGcGUACc -3'
miRNA:   3'- gGUGGUGGAuGGC-CCUGa--UGCC-CGUG- -5'
19609 5' -58.3 NC_004686.1 + 39896 0.66 0.579353
Target:  5'- cCCAgCCACg-ACCGGGGaacUUGCGGcGCAa -3'
miRNA:   3'- -GGU-GGUGgaUGGCCCU---GAUGCC-CGUg -5'
19609 5' -58.3 NC_004686.1 + 11780 0.66 0.569832
Target:  5'- gCAgCGCCggauccauguaugggGCUGGGGCgaaGGGCGCc -3'
miRNA:   3'- gGUgGUGGa--------------UGGCCCUGaugCCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 12708 0.66 0.547777
Target:  5'- gCACC-CCUugUGGGcACguUGCaGGCACu -3'
miRNA:   3'- gGUGGuGGAugGCCC-UG--AUGcCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 10146 0.66 0.547777
Target:  5'- aCGCCGCCU--UGGGGCgGCucGGCGCg -3'
miRNA:   3'- gGUGGUGGAugGCCCUGaUGc-CCGUG- -5'
19609 5' -58.3 NC_004686.1 + 53406 0.66 0.547777
Target:  5'- aCACCACC-ACCGGuGccGCUGCcuggucuuGGGCGa -3'
miRNA:   3'- gGUGGUGGaUGGCC-C--UGAUG--------CCCGUg -5'
19609 5' -58.3 NC_004686.1 + 42290 0.67 0.537368
Target:  5'- gCCACUGCCcGCCacaaGGAacugaUGCGGGUGCu -3'
miRNA:   3'- -GGUGGUGGaUGGc---CCUg----AUGCCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 31196 0.67 0.50658
Target:  5'- gCGCCAUUUcgugcgGCCGucgucGCUGCGGGCGCg -3'
miRNA:   3'- gGUGGUGGA------UGGCcc---UGAUGCCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 38936 0.67 0.500511
Target:  5'- aCugCGgCUGCaCGGGGCauucccagcagaucuUGCGGGCGg -3'
miRNA:   3'- gGugGUgGAUG-GCCCUG---------------AUGCCCGUg -5'
19609 5' -58.3 NC_004686.1 + 14833 0.67 0.496483
Target:  5'- cCCGgucuCCACCUGCCGGuACaccgcgUACGGGUg- -3'
miRNA:   3'- -GGU----GGUGGAUGGCCcUG------AUGCCCGug -5'
19609 5' -58.3 NC_004686.1 + 55376 0.67 0.496483
Target:  5'- uCUACCACCUGuCCGGuGGaggaGGcGCACa -3'
miRNA:   3'- -GGUGGUGGAU-GGCC-CUgaugCC-CGUG- -5'
19609 5' -58.3 NC_004686.1 + 24939 0.68 0.466762
Target:  5'- cCCGCCACCcACuCGGGugcGCGGGguUu -3'
miRNA:   3'- -GGUGGUGGaUG-GCCCugaUGCCCguG- -5'
19609 5' -58.3 NC_004686.1 + 14492 0.68 0.447467
Target:  5'- cCCGCUACCUGCCaGGcGAUccggagccgugGCGcGGCGCc -3'
miRNA:   3'- -GGUGGUGGAUGG-CC-CUGa----------UGC-CCGUG- -5'
19609 5' -58.3 NC_004686.1 + 9569 0.68 0.428623
Target:  5'- uCC-CCACggAUgGaGGACUGCaGGGCACg -3'
miRNA:   3'- -GGuGGUGgaUGgC-CCUGAUG-CCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 22557 0.69 0.419378
Target:  5'- gUCAUCGCC-GCCGGGGCg--GGGCu- -3'
miRNA:   3'- -GGUGGUGGaUGGCCCUGaugCCCGug -5'
19609 5' -58.3 NC_004686.1 + 56122 0.69 0.410255
Target:  5'- aCCGCCAggcgaCgcgGCCGGGuugGCGGGUGCc -3'
miRNA:   3'- -GGUGGUg----Ga--UGGCCCugaUGCCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 14140 0.69 0.401257
Target:  5'- aCCACaCACUUaucaaGCCGGcccGACcaGCGGGCACc -3'
miRNA:   3'- -GGUG-GUGGA-----UGGCC---CUGa-UGCCCGUG- -5'
19609 5' -58.3 NC_004686.1 + 21087 0.69 0.375029
Target:  5'- aCUGCCACCUACgGuGGugUggcgauggaACGGGuCGCu -3'
miRNA:   3'- -GGUGGUGGAUGgC-CCugA---------UGCCC-GUG- -5'
19609 5' -58.3 NC_004686.1 + 54875 0.69 0.374175
Target:  5'- cCCGCCaACCUgaaACCgucaucgaacacuGGGACaccUGCGGGCAa -3'
miRNA:   3'- -GGUGG-UGGA---UGG-------------CCCUG---AUGCCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.