miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19611 3' -57.7 NC_004686.1 + 27247 0.66 0.574264
Target:  5'- --gCGGUGGUGUcccagucGCCgACCGGUUUc- -3'
miRNA:   3'- auaGCCGCCGCA-------UGGgUGGCCAGAau -5'
19611 3' -57.7 NC_004686.1 + 45827 0.66 0.564562
Target:  5'- -uUCGGCGGUG-ACggGCCGGcCUUGg -3'
miRNA:   3'- auAGCCGCCGCaUGggUGGCCaGAAU- -5'
19611 3' -57.7 NC_004686.1 + 28849 0.66 0.531511
Target:  5'- gGUUGGCGGCGaagUGgucguugacggugUUCGCCGGUCUg- -3'
miRNA:   3'- aUAGCCGCCGC---AU-------------GGGUGGCCAGAau -5'
19611 3' -57.7 NC_004686.1 + 26676 0.67 0.501247
Target:  5'- gAUCGGCGG-GUGCUCGCCaGGa---- -3'
miRNA:   3'- aUAGCCGCCgCAUGGGUGG-CCagaau -5'
19611 3' -57.7 NC_004686.1 + 12507 0.67 0.489964
Target:  5'- cAUCGGCGGaggcugcUGU-CCUACCGGUUg-- -3'
miRNA:   3'- aUAGCCGCC-------GCAuGGGUGGCCAGaau -5'
19611 3' -57.7 NC_004686.1 + 22489 0.68 0.450972
Target:  5'- --cCGGCGGCGaugACCguCACCGGUg--- -3'
miRNA:   3'- auaGCCGCCGCa--UGG--GUGGCCAgaau -5'
19611 3' -57.7 NC_004686.1 + 19611 0.68 0.441249
Target:  5'- cGUCGGCGGCGUcguAUCaACCGG-CUc- -3'
miRNA:   3'- aUAGCCGCCGCA---UGGgUGGCCaGAau -5'
19611 3' -57.7 NC_004686.1 + 5660 0.69 0.385538
Target:  5'- gGUUGGUGGUgcgGUACaCACCGGUCg-- -3'
miRNA:   3'- aUAGCCGCCG---CAUGgGUGGCCAGaau -5'
19611 3' -57.7 NC_004686.1 + 1361 0.7 0.348577
Target:  5'- --gCGGCGGCGUACCCAuaaagaacgccaacCCGaUCUc- -3'
miRNA:   3'- auaGCCGCCGCAUGGGU--------------GGCcAGAau -5'
19611 3' -57.7 NC_004686.1 + 56156 0.7 0.342804
Target:  5'- --aCGGCGucGCGggUCCACCGGUCg-- -3'
miRNA:   3'- auaGCCGC--CGCauGGGUGGCCAGaau -5'
19611 3' -57.7 NC_004686.1 + 53356 0.7 0.326693
Target:  5'- --aCGGCGGUaGUugUUACCGGUCa-- -3'
miRNA:   3'- auaGCCGCCG-CAugGGUGGCCAGaau -5'
19611 3' -57.7 NC_004686.1 + 22680 0.7 0.326693
Target:  5'- --cCGGCGGUGggggugaCCACCGGUCc-- -3'
miRNA:   3'- auaGCCGCCGCaug----GGUGGCCAGaau -5'
19611 3' -57.7 NC_004686.1 + 11175 0.71 0.281769
Target:  5'- cAUCGGCGGUgagcauGUGCUCGCCGGgggCa-- -3'
miRNA:   3'- aUAGCCGCCG------CAUGGGUGGCCa--Gaau -5'
19611 3' -57.7 NC_004686.1 + 10977 0.74 0.181036
Target:  5'- uUGUgGGCGGCGUGuacCCCGCCGGg---- -3'
miRNA:   3'- -AUAgCCGCCGCAU---GGGUGGCCagaau -5'
19611 3' -57.7 NC_004686.1 + 35242 1.05 0.001101
Target:  5'- gUAUCGGCGGCGUACCCACCGGUCUUAc -3'
miRNA:   3'- -AUAGCCGCCGCAUGGGUGGCCAGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.