miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19611 5' -51.9 NC_004686.1 + 4394 0.66 0.900771
Target:  5'- aGGCAAuCACCUCGcaagaaGAGUUGaaCGCCGc -3'
miRNA:   3'- -CCGUU-GUGGAGUa-----CUCAGUagGUGGC- -5'
19611 5' -51.9 NC_004686.1 + 48989 0.66 0.893643
Target:  5'- gGGCGGCgGCCagauucCGUGcGcCGUCCGCCGu -3'
miRNA:   3'- -CCGUUG-UGGa-----GUACuCaGUAGGUGGC- -5'
19611 5' -51.9 NC_004686.1 + 44263 0.66 0.893643
Target:  5'- gGGCAGugucauCACCacc-GAGUCAUCC-CCGa -3'
miRNA:   3'- -CCGUU------GUGGaguaCUCAGUAGGuGGC- -5'
19611 5' -51.9 NC_004686.1 + 41968 0.66 0.879345
Target:  5'- cGGCcGCACCUUGUGGaUCGacugggcugaaggugCCGCCGa -3'
miRNA:   3'- -CCGuUGUGGAGUACUcAGUa--------------GGUGGC- -5'
19611 5' -51.9 NC_004686.1 + 8100 0.66 0.870628
Target:  5'- aGCGGCGCCUCAucgUGAcggaucGUgAUCUugCGa -3'
miRNA:   3'- cCGUUGUGGAGU---ACU------CAgUAGGugGC- -5'
19611 5' -51.9 NC_004686.1 + 18705 0.66 0.870628
Target:  5'- aGCGACACCagguUCgGUGAGUgAUgCACCc -3'
miRNA:   3'- cCGUUGUGG----AG-UACUCAgUAgGUGGc -5'
19611 5' -51.9 NC_004686.1 + 39243 0.67 0.862434
Target:  5'- uGGCGugGCUgacccgCAUGGGUUGgaCCGCCa -3'
miRNA:   3'- -CCGUugUGGa-----GUACUCAGUa-GGUGGc -5'
19611 5' -51.9 NC_004686.1 + 28488 0.67 0.862434
Target:  5'- cGGCGAuCGCCUCAg----CAUCCugCu -3'
miRNA:   3'- -CCGUU-GUGGAGUacucaGUAGGugGc -5'
19611 5' -51.9 NC_004686.1 + 19608 0.67 0.862434
Target:  5'- cGGCGGCgucguaucaaccGgCUCcgGGGUaggcgCAUCCACCGc -3'
miRNA:   3'- -CCGUUG------------UgGAGuaCUCA-----GUAGGUGGC- -5'
19611 5' -51.9 NC_004686.1 + 46352 0.67 0.836388
Target:  5'- cGGUGAUGCgUCGUGAGgaUCAggUCCAUCa -3'
miRNA:   3'- -CCGUUGUGgAGUACUC--AGU--AGGUGGc -5'
19611 5' -51.9 NC_004686.1 + 5473 0.67 0.836388
Target:  5'- cGCGACACCgUCcgGGGaCAgguugUCACCGa -3'
miRNA:   3'- cCGUUGUGG-AGuaCUCaGUa----GGUGGC- -5'
19611 5' -51.9 NC_004686.1 + 18763 0.67 0.835484
Target:  5'- gGGCAGCGCCUCGUcaagcugGuAGUaCAcCCAgCCGg -3'
miRNA:   3'- -CCGUUGUGGAGUA-------C-UCA-GUaGGU-GGC- -5'
19611 5' -51.9 NC_004686.1 + 22141 0.67 0.827248
Target:  5'- cGGCGGCACCgcu---GUCAU-CACCGg -3'
miRNA:   3'- -CCGUUGUGGaguacuCAGUAgGUGGC- -5'
19611 5' -51.9 NC_004686.1 + 12864 0.67 0.824464
Target:  5'- uGGCcGCcCCUgAUGAGUCAUCgcuucgcggcgcugCACCu -3'
miRNA:   3'- -CCGuUGuGGAgUACUCAGUAG--------------GUGGc -5'
19611 5' -51.9 NC_004686.1 + 16642 0.68 0.817894
Target:  5'- uGGUgauGCGCCgccgguggUgGUGAGUCGUCCACg- -3'
miRNA:   3'- -CCGu--UGUGG--------AgUACUCAGUAGGUGgc -5'
19611 5' -51.9 NC_004686.1 + 42064 0.7 0.670906
Target:  5'- cGGCGGCACCuUCAgcccAGUCgAUCCACa- -3'
miRNA:   3'- -CCGUUGUGG-AGUac--UCAG-UAGGUGgc -5'
19611 5' -51.9 NC_004686.1 + 32154 0.71 0.648542
Target:  5'- cGGCuuuccgGGCGCCg-GUGAGgaacgccaUCAUCCACCGa -3'
miRNA:   3'- -CCG------UUGUGGagUACUC--------AGUAGGUGGC- -5'
19611 5' -51.9 NC_004686.1 + 10082 0.71 0.614904
Target:  5'- uGCAGCGCCUCAccGGUCA-CC-CCGu -3'
miRNA:   3'- cCGUUGUGGAGUacUCAGUaGGuGGC- -5'
19611 5' -51.9 NC_004686.1 + 42888 0.72 0.559274
Target:  5'- cGGCGAC---UCAUGAGgCGUCCGCCu -3'
miRNA:   3'- -CCGUUGuggAGUACUCaGUAGGUGGc -5'
19611 5' -51.9 NC_004686.1 + 3360 0.8 0.214935
Target:  5'- cGCAGCGCCggCGUGAaaUCAUCCACCGc -3'
miRNA:   3'- cCGUUGUGGa-GUACUc-AGUAGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.