miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19612 3' -57.3 NC_004686.1 + 37909 0.65 0.615576
Target:  5'- cGCCGCAUGGggCGaCGGCccGCCUaucucagaacaagcCAGCg -3'
miRNA:   3'- -UGGCGUAUCa-GUgGCCGu-CGGA--------------GUCG- -5'
19612 3' -57.3 NC_004686.1 + 42075 0.66 0.607936
Target:  5'- cCCGUAcucGUCGgCGGCAcCUUCAGCc -3'
miRNA:   3'- uGGCGUau-CAGUgGCCGUcGGAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 9527 0.66 0.607935
Target:  5'- cGCUGuCGgaacGGUCAUCGGUaaggguaucGGCCUgGGCa -3'
miRNA:   3'- -UGGC-GUa---UCAGUGGCCG---------UCGGAgUCG- -5'
19612 3' -57.3 NC_004686.1 + 30463 0.66 0.607935
Target:  5'- -aCGCAUAcugcgCACCGGCcgugaauGCCUCAcccGCg -3'
miRNA:   3'- ugGCGUAUca---GUGGCCGu------CGGAGU---CG- -5'
19612 3' -57.3 NC_004686.1 + 43614 0.66 0.604664
Target:  5'- uGCCGCugccguGUC-CUGGUccgaucagauaaacGGCUUCAGCg -3'
miRNA:   3'- -UGGCGuau---CAGuGGCCG--------------UCGGAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 7958 0.66 0.59704
Target:  5'- cCUGCGUAGUCuugauugugguGCCGGCgaAGuCCUUAuGCu -3'
miRNA:   3'- uGGCGUAUCAG-----------UGGCCG--UC-GGAGU-CG- -5'
19612 3' -57.3 NC_004686.1 + 49811 0.66 0.59704
Target:  5'- cCCGCGUG---GCCGGC--UCUCAGCg -3'
miRNA:   3'- uGGCGUAUcagUGGCCGucGGAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 3868 0.66 0.586173
Target:  5'- gAUCGCGgaga-ACCGGcCGGCCaccUCAGCg -3'
miRNA:   3'- -UGGCGUaucagUGGCC-GUCGG---AGUCG- -5'
19612 3' -57.3 NC_004686.1 + 32479 0.66 0.586173
Target:  5'- cGCCGUAUGcaCACCGcgauCGGCCgCGGCg -3'
miRNA:   3'- -UGGCGUAUcaGUGGCc---GUCGGaGUCG- -5'
19612 3' -57.3 NC_004686.1 + 39376 0.66 0.575345
Target:  5'- cGCUGCAcGGUgcggUGgUGGCAGCC-CAGCu -3'
miRNA:   3'- -UGGCGUaUCA----GUgGCCGUCGGaGUCG- -5'
19612 3' -57.3 NC_004686.1 + 50623 0.66 0.564562
Target:  5'- cGCCGCGggGGaUUACCaGGCGG-CUCAGg -3'
miRNA:   3'- -UGGCGUa-UC-AGUGG-CCGUCgGAGUCg -5'
19612 3' -57.3 NC_004686.1 + 22667 0.67 0.553833
Target:  5'- cCCGCAUcaUCgaACCGGCGGCagcguucaUCGGUg -3'
miRNA:   3'- uGGCGUAucAG--UGGCCGUCGg-------AGUCG- -5'
19612 3' -57.3 NC_004686.1 + 22117 0.67 0.553833
Target:  5'- gUCGagcAGUgGCgCGcGCGGCCUCGGCg -3'
miRNA:   3'- uGGCguaUCAgUG-GC-CGUCGGAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 33928 0.67 0.543166
Target:  5'- uUCGCGUcaccccggcccaAGUCGCCGucGCAGCC-CuGCa -3'
miRNA:   3'- uGGCGUA------------UCAGUGGC--CGUCGGaGuCG- -5'
19612 3' -57.3 NC_004686.1 + 5696 0.67 0.522044
Target:  5'- -aCGCGgagaAGUCACCGGCgauGGCCUuCAcGUu -3'
miRNA:   3'- ugGCGUa---UCAGUGGCCG---UCGGA-GU-CG- -5'
19612 3' -57.3 NC_004686.1 + 12087 0.67 0.522044
Target:  5'- cCCGCAacacUGGUguugccggCGCCGGCGGgaauguaucCCUCAGUu -3'
miRNA:   3'- uGGCGU----AUCA--------GUGGCCGUC---------GGAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 3355 0.67 0.511601
Target:  5'- cGCCgGCGUGaaaucaucCACCGcGCcuucAGCCUCAGCg -3'
miRNA:   3'- -UGG-CGUAUca------GUGGC-CG----UCGGAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 19626 0.67 0.511601
Target:  5'- aACCGUuu-----CCGGCGGCgUCGGCg -3'
miRNA:   3'- -UGGCGuaucaguGGCCGUCGgAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 15743 0.67 0.501247
Target:  5'- cACCGCA---UCGCgGGCAGgaUUCGGCu -3'
miRNA:   3'- -UGGCGUaucAGUGgCCGUCg-GAGUCG- -5'
19612 3' -57.3 NC_004686.1 + 12157 0.67 0.501247
Target:  5'- aGCCGCcUGGUCgaucagACCGuuGaucGCCUCGGCg -3'
miRNA:   3'- -UGGCGuAUCAG------UGGCcgU---CGGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.