miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19612 5' -56.9 NC_004686.1 + 12771 0.66 0.691135
Target:  5'- gUGCa-GCGCCGcGAAgCGAUGACUCa -3'
miRNA:   3'- uGCGgcUGCGGC-CUUgGCUGUUGAGg -5'
19612 5' -56.9 NC_004686.1 + 26721 0.66 0.691135
Target:  5'- gAUGCUGuCGCCGuGAUCGGCGagaaACUCg -3'
miRNA:   3'- -UGCGGCuGCGGCcUUGGCUGU----UGAGg -5'
19612 5' -56.9 NC_004686.1 + 22101 0.66 0.691135
Target:  5'- cGCGCCGcCGUCGGcGCCGuccuugCCg -3'
miRNA:   3'- -UGCGGCuGCGGCCuUGGCuguugaGG- -5'
19612 5' -56.9 NC_004686.1 + 12315 0.66 0.691135
Target:  5'- gUGCCGAUGCCGGccauCUGGaa--UCCa -3'
miRNA:   3'- uGCGGCUGCGGCCuu--GGCUguugAGG- -5'
19612 5' -56.9 NC_004686.1 + 39282 0.66 0.690077
Target:  5'- uCGCCGAacaGCUGGGcugccaccaccgcACCGuGCAGCgugCCc -3'
miRNA:   3'- uGCGGCUg--CGGCCU-------------UGGC-UGUUGa--GG- -5'
19612 5' -56.9 NC_004686.1 + 13266 0.66 0.68053
Target:  5'- -gGCCGGCGacCCGGAcugguaugagaaGCCGcACGugUCg -3'
miRNA:   3'- ugCGGCUGC--GGCCU------------UGGC-UGUugAGg -5'
19612 5' -56.9 NC_004686.1 + 5865 0.66 0.68053
Target:  5'- uCGUCGGCGUCGcGGACC-ACAGCg-- -3'
miRNA:   3'- uGCGGCUGCGGC-CUUGGcUGUUGagg -5'
19612 5' -56.9 NC_004686.1 + 25627 0.66 0.68053
Target:  5'- cCGUCGuggaGCUGGGACCGaACAcGCUaCCg -3'
miRNA:   3'- uGCGGCug--CGGCCUUGGC-UGU-UGA-GG- -5'
19612 5' -56.9 NC_004686.1 + 161 0.66 0.669881
Target:  5'- cACGCCGGCgaaccucaGCCc--GCCGACGAUcCCg -3'
miRNA:   3'- -UGCGGCUG--------CGGccuUGGCUGUUGaGG- -5'
19612 5' -56.9 NC_004686.1 + 35262 0.66 0.669881
Target:  5'- gGCGaaGGCGuuGGAGuuGuCggUUCCg -3'
miRNA:   3'- -UGCggCUGCggCCUUggCuGuuGAGG- -5'
19612 5' -56.9 NC_004686.1 + 22453 0.66 0.669881
Target:  5'- gUGCCGGugcCGCCauuGGAGCCGuCAccGCUgCCg -3'
miRNA:   3'- uGCGGCU---GCGG---CCUUGGCuGU--UGA-GG- -5'
19612 5' -56.9 NC_004686.1 + 12063 0.66 0.668814
Target:  5'- gGCGCCGAgGCgaucaaCGGucugaucGACCaGGCGGCUUCu -3'
miRNA:   3'- -UGCGGCUgCG------GCC-------UUGG-CUGUUGAGG- -5'
19612 5' -56.9 NC_004686.1 + 43663 0.66 0.659199
Target:  5'- cCGCCcaucauugcGGCGCUGGuggcuaucACUGAgGACUCCc -3'
miRNA:   3'- uGCGG---------CUGCGGCCu-------UGGCUgUUGAGG- -5'
19612 5' -56.9 NC_004686.1 + 37252 0.66 0.659199
Target:  5'- cCGCUccccGCGCCGGGACCcucCAAC-CCa -3'
miRNA:   3'- uGCGGc---UGCGGCCUUGGcu-GUUGaGG- -5'
19612 5' -56.9 NC_004686.1 + 3248 0.66 0.659199
Target:  5'- cCGCCGuauCCGGAAgCGACGcCUCa -3'
miRNA:   3'- uGCGGCugcGGCCUUgGCUGUuGAGg -5'
19612 5' -56.9 NC_004686.1 + 5757 0.66 0.659199
Target:  5'- cCGuCCGGguCGCC-GAACuCGAuCAGCUCCa -3'
miRNA:   3'- uGC-GGCU--GCGGcCUUG-GCU-GUUGAGG- -5'
19612 5' -56.9 NC_004686.1 + 30036 0.66 0.659199
Target:  5'- -aGCCGGgGUCGGuguGgCGGCGGCUUg -3'
miRNA:   3'- ugCGGCUgCGGCCu--UgGCUGUUGAGg -5'
19612 5' -56.9 NC_004686.1 + 17074 0.66 0.659199
Target:  5'- uACGCCGAccCGCCGGcGGCCa--GGC-CCg -3'
miRNA:   3'- -UGCGGCU--GCGGCC-UUGGcugUUGaGG- -5'
19612 5' -56.9 NC_004686.1 + 10426 0.66 0.648492
Target:  5'- -gGCCGAuaucCGCgGGGACC-ACGACaCCg -3'
miRNA:   3'- ugCGGCU----GCGgCCUUGGcUGUUGaGG- -5'
19612 5' -56.9 NC_004686.1 + 20223 0.66 0.647421
Target:  5'- uGCGuuGAUGCCGaAAUCGGagcuuucCGAUUCCg -3'
miRNA:   3'- -UGCggCUGCGGCcUUGGCU-------GUUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.