miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19613 5' -55 NC_004686.1 + 17726 0.66 0.731732
Target:  5'- gUCACU-GCUGCGCGACU--UGCCc-- -3'
miRNA:   3'- -GGUGAgUGGCGCGCUGAguACGGuuu -5'
19613 5' -55 NC_004686.1 + 47726 0.66 0.721036
Target:  5'- gCCGCacaaaCACC-CGCGGCUCcgGUGUCGGAu -3'
miRNA:   3'- -GGUGa----GUGGcGCGCUGAG--UACGGUUU- -5'
19613 5' -55 NC_004686.1 + 13753 0.66 0.699389
Target:  5'- aCCGgacCUCACCGCcgagugugagGCGAUcuggCGUGCCAc- -3'
miRNA:   3'- -GGU---GAGUGGCG----------CGCUGa---GUACGGUuu -5'
19613 5' -55 NC_004686.1 + 47949 0.66 0.68846
Target:  5'- -gGCUCGCCgGCGCGACggaaGCCu-- -3'
miRNA:   3'- ggUGAGUGG-CGCGCUGaguaCGGuuu -5'
19613 5' -55 NC_004686.1 + 49871 0.66 0.68846
Target:  5'- cCCgACUCGCCG-GCGACgaagGCCGc- -3'
miRNA:   3'- -GG-UGAGUGGCgCGCUGaguaCGGUuu -5'
19613 5' -55 NC_004686.1 + 25655 0.69 0.556064
Target:  5'- aCCGCagGCCgGCG-GACUCGUgGCCGAu -3'
miRNA:   3'- -GGUGagUGG-CGCgCUGAGUA-CGGUUu -5'
19613 5' -55 NC_004686.1 + 21961 0.69 0.52269
Target:  5'- gUACUCAacgaCGCGCgGACUCggcggcgcuggcgGUGCCAAGg -3'
miRNA:   3'- gGUGAGUg---GCGCG-CUGAG-------------UACGGUUU- -5'
19613 5' -55 NC_004686.1 + 49346 0.71 0.422282
Target:  5'- gUACUUcaGCCGCGCG-CUCA-GCCAGu -3'
miRNA:   3'- gGUGAG--UGGCGCGCuGAGUaCGGUUu -5'
19613 5' -55 NC_004686.1 + 22069 0.72 0.38511
Target:  5'- gUCGCUCACCGCGaaCGGCg---GCCAGGg -3'
miRNA:   3'- -GGUGAGUGGCGC--GCUGaguaCGGUUU- -5'
19613 5' -55 NC_004686.1 + 5259 0.79 0.131692
Target:  5'- cCCGCUCACCgGUGCGGCUC-UGUCGGGu -3'
miRNA:   3'- -GGUGAGUGG-CGCGCUGAGuACGGUUU- -5'
19613 5' -55 NC_004686.1 + 35588 1.08 0.001132
Target:  5'- cCCACUCACCGCGCGACUCAUGCCAAAa -3'
miRNA:   3'- -GGUGAGUGGCGCGCUGAGUACGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.