miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19617 5' -53.7 NC_004686.1 + 18830 0.66 0.816635
Target:  5'- cGCGgauguaGUGCGUGCCCGacccgacgaUcacgaccugcaccucGAACUCGUCg -3'
miRNA:   3'- aCGCg-----UAUGCACGGGU---------A---------------CUUGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 22188 0.66 0.8119
Target:  5'- cGCGCcacugcucgacgaGUugGUGCCCuuuuuGC-CGCCc -3'
miRNA:   3'- aCGCG-------------UAugCACGGGuacu-UGaGCGG- -5'
19617 5' -53.7 NC_004686.1 + 35289 0.66 0.803255
Target:  5'- gGCGUcgGCGUGga-AUGAGCUgGCUg -3'
miRNA:   3'- aCGCGuaUGCACgggUACUUGAgCGG- -5'
19617 5' -53.7 NC_004686.1 + 49902 0.66 0.793475
Target:  5'- cGUGCGgugucUGCGUcGCUCAUGc-CUCGCUc -3'
miRNA:   3'- aCGCGU-----AUGCA-CGGGUACuuGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 27462 0.66 0.787524
Target:  5'- gGCGCGUucACGgGCagcacguacuuccaUAUGAACUCGCa -3'
miRNA:   3'- aCGCGUA--UGCaCGg-------------GUACUUGAGCGg -5'
19617 5' -53.7 NC_004686.1 + 43950 0.66 0.773409
Target:  5'- uUGcCGCGgACGUGCUCGUcacaGACcCGCCa -3'
miRNA:   3'- -AC-GCGUaUGCACGGGUAc---UUGaGCGG- -5'
19617 5' -53.7 NC_004686.1 + 6006 0.67 0.763147
Target:  5'- aGcCGCAgACcUGCCCgAUGAcaUCGCCg -3'
miRNA:   3'- aC-GCGUaUGcACGGG-UACUugAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 10661 0.67 0.762112
Target:  5'- cUGCGCGgcggcuuuCGUcuucgcaGCCCAcguaucGAGCUUGCCg -3'
miRNA:   3'- -ACGCGUau------GCA-------CGGGUa-----CUUGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 6076 0.67 0.752746
Target:  5'- cGCGCGUcACGggucGCgCCAUGccuGGC-CGCCg -3'
miRNA:   3'- aCGCGUA-UGCa---CG-GGUAC---UUGaGCGG- -5'
19617 5' -53.7 NC_004686.1 + 4803 0.67 0.720835
Target:  5'- uUGCGCu--CG-GCCUcgGcAUUCGCCu -3'
miRNA:   3'- -ACGCGuauGCaCGGGuaCuUGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 30980 0.67 0.720835
Target:  5'- cUGCGCGcUACGUGgCguUGGcugaUCGCCu -3'
miRNA:   3'- -ACGCGU-AUGCACgGguACUug--AGCGG- -5'
19617 5' -53.7 NC_004686.1 + 54769 0.67 0.720835
Target:  5'- --aGCGUugG-GCgCCGUGGuACUCGUCg -3'
miRNA:   3'- acgCGUAugCaCG-GGUACU-UGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 45848 0.67 0.710002
Target:  5'- gGCGuCGUugGUGgUgGUGAAUUCGgCg -3'
miRNA:   3'- aCGC-GUAugCACgGgUACUUGAGCgG- -5'
19617 5' -53.7 NC_004686.1 + 2101 0.68 0.677079
Target:  5'- gGUGUAUGCG-G-CgAUGAccGCUCGCCg -3'
miRNA:   3'- aCGCGUAUGCaCgGgUACU--UGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 24665 0.68 0.654893
Target:  5'- gGUGCcUGCG-GCCCA---ACUCGUCa -3'
miRNA:   3'- aCGCGuAUGCaCGGGUacuUGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 18906 0.68 0.654893
Target:  5'- gGCGa--AgGUGCCguggauUGAACUCGCCg -3'
miRNA:   3'- aCGCguaUgCACGGgu----ACUUGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 39466 0.69 0.63262
Target:  5'- gGCGCAUuuccGCG-GCCaggguUGGACUCGUg -3'
miRNA:   3'- aCGCGUA----UGCaCGGgu---ACUUGAGCGg -5'
19617 5' -53.7 NC_004686.1 + 38420 0.71 0.512075
Target:  5'- cGgGCAUcauCG-GCCCcgG-ACUCGCCg -3'
miRNA:   3'- aCgCGUAu--GCaCGGGuaCuUGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 52892 0.71 0.500464
Target:  5'- gGCGCcaggaucAUGCG-GCgCAUG-GCUCGCCg -3'
miRNA:   3'- aCGCG-------UAUGCaCGgGUACuUGAGCGG- -5'
19617 5' -53.7 NC_004686.1 + 51385 0.73 0.383694
Target:  5'- aGUGCGauUGCGgcugGUCCAUGAacACUCGCg -3'
miRNA:   3'- aCGCGU--AUGCa---CGGGUACU--UGAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.