miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 3' -52.3 NC_001347.2 + 68677 0.66 0.994947
Target:  5'- cACGACGguaGUaGGGAGaUCcaugacGCGGCGGCg -3'
miRNA:   3'- -UGUUGCag-CA-CCUUC-AGu-----CGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 20885 0.66 0.994947
Target:  5'- cCGACGUCGcUGGAAaugCAuCAGCuGCg -3'
miRNA:   3'- uGUUGCAGC-ACCUUca-GUcGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 158728 0.66 0.994947
Target:  5'- uGCAGCaGgcgCGcGGcGGuUUAGCAGCGGCu -3'
miRNA:   3'- -UGUUG-Ca--GCaCCuUC-AGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 139680 0.66 0.994872
Target:  5'- gGCGGCGUUGcGGcAguuugugcacgacAGUCAGCAGUcgggaAGCu -3'
miRNA:   3'- -UGUUGCAGCaCC-U-------------UCAGUCGUCG-----UCG- -5'
1962 3' -52.3 NC_001347.2 + 98022 0.66 0.994155
Target:  5'- cCGGCGUCGgacgcuccuccGGAcgaaacgccgcGG-CGGCAGCGGCc -3'
miRNA:   3'- uGUUGCAGCa----------CCU-----------UCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 228059 0.66 0.994155
Target:  5'- -aGACGUCGUGGcgaggggauGGGuuuauuggauaUCGGUgaAGCAGCg -3'
miRNA:   3'- ugUUGCAGCACC---------UUC-----------AGUCG--UCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 165091 0.66 0.993267
Target:  5'- gGCAGCGgagGUaaGGAAGgugCGGCGGUGGUc -3'
miRNA:   3'- -UGUUGCag-CA--CCUUCa--GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 77518 0.66 0.993267
Target:  5'- cGCGugGccgaggaGUGGAAGUU-GCAcGCGGCg -3'
miRNA:   3'- -UGUugCag-----CACCUUCAGuCGU-CGUCG- -5'
1962 3' -52.3 NC_001347.2 + 198117 0.66 0.992274
Target:  5'- --cGCGUUGaGGAuAGUCGcGCGGUGGCa -3'
miRNA:   3'- uguUGCAGCaCCU-UCAGU-CGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 185146 0.66 0.992274
Target:  5'- -gGGCGgcaCG-GGcAAGugcuUCAGCAGCAGCu -3'
miRNA:   3'- ugUUGCa--GCaCC-UUC----AGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 181051 0.66 0.991845
Target:  5'- uCAGCGUCGUccgcgcgGGCGGCAGCa -3'
miRNA:   3'- uGUUGCAGCAccuucagUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 154806 0.66 0.991168
Target:  5'- uACAGCG-CGUGucgauGGcCAGCGGCGcGCa -3'
miRNA:   3'- -UGUUGCaGCACcu---UCaGUCGUCGU-CG- -5'
1962 3' -52.3 NC_001347.2 + 163214 0.66 0.991168
Target:  5'- --cGCGUaCGUGGc-GUUGGCGGCAcGCa -3'
miRNA:   3'- uguUGCA-GCACCuuCAGUCGUCGU-CG- -5'
1962 3' -52.3 NC_001347.2 + 174994 0.67 0.98994
Target:  5'- uGguGCGggcCGUGccgguGGAGUC-GCAGCAGCg -3'
miRNA:   3'- -UguUGCa--GCAC-----CUUCAGuCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 188248 0.67 0.98994
Target:  5'- gACGACGagGUGGug--CAGCgugagaaacAGCAGCu -3'
miRNA:   3'- -UGUUGCagCACCuucaGUCG---------UCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 158193 0.67 0.988584
Target:  5'- -gGugGcCGUGGucuGUCGGCAGU-GCg -3'
miRNA:   3'- ugUugCaGCACCuu-CAGUCGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 9500 0.67 0.988584
Target:  5'- cGCAACGaUUcUGGAAaugCGGUAGUAGCa -3'
miRNA:   3'- -UGUUGC-AGcACCUUca-GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 104327 0.67 0.987089
Target:  5'- cACGACGagGUGGAccgcuGGaucCGGCAcGCGGCc -3'
miRNA:   3'- -UGUUGCagCACCU-----UCa--GUCGU-CGUCG- -5'
1962 3' -52.3 NC_001347.2 + 128436 0.67 0.987089
Target:  5'- cACGGCGccugcugCGUGGccGUCaAGCGGC-GCg -3'
miRNA:   3'- -UGUUGCa------GCACCuuCAG-UCGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 93218 0.67 0.983651
Target:  5'- gGCGACGagcUCGcUGaGcGG-CAGCGGCGGCa -3'
miRNA:   3'- -UGUUGC---AGC-AC-CuUCaGUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.