Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1962 | 3' | -52.3 | NC_001347.2 | + | 78361 | 0.68 | 0.974757 |
Target: 5'- cCGGCGUgGUGGGAccCGGCGGC-GCc -3' miRNA: 3'- uGUUGCAgCACCUUcaGUCGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 150581 | 0.68 | 0.981692 |
Target: 5'- uCAGCGUCGgcuccGGcAG-UAGUGGCGGCg -3' miRNA: 3'- uGUUGCAGCa----CCuUCaGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 210071 | 0.68 | 0.974757 |
Target: 5'- aACAcCGUUGguUGGAGaagcguauucgcGUCAGgAGCAGCg -3' miRNA: 3'- -UGUuGCAGC--ACCUU------------CAGUCgUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 37935 | 0.68 | 0.972068 |
Target: 5'- cGCGGCG-CGcGGGug-CAGguGCAGCg -3' miRNA: 3'- -UGUUGCaGCaCCUucaGUCguCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 173812 | 0.68 | 0.981692 |
Target: 5'- -uGACGUCcaaagGUGGA--UCgGGCGGCGGCg -3' miRNA: 3'- ugUUGCAG-----CACCUucAG-UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 77298 | 0.68 | 0.981692 |
Target: 5'- gGCGuCGUCGUacuuGGgcGUgGGCcGCGGCg -3' miRNA: 3'- -UGUuGCAGCA----CCuuCAgUCGuCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 97894 | 0.69 | 0.955494 |
Target: 5'- aACcACGUCGUcuucGgcGUCgGGCGGCGGCg -3' miRNA: 3'- -UGuUGCAGCAc---CuuCAG-UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 173506 | 0.69 | 0.959245 |
Target: 5'- gACAaaaauuACGUCG-GGAacagcggcaAGUCgcguGGCGGCGGCg -3' miRNA: 3'- -UGU------UGCAGCaCCU---------UCAG----UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 156455 | 0.69 | 0.960683 |
Target: 5'- uCGACGUCGUuggcgguccGGAAccacGUCaccguaagcagucacAGCGGCAGCg -3' miRNA: 3'- uGUUGCAGCA---------CCUU----CAG---------------UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 29737 | 0.69 | 0.966082 |
Target: 5'- -uGugGUgGcUGGGAGUggUGGCGGCAGCc -3' miRNA: 3'- ugUugCAgC-ACCUUCA--GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 82713 | 0.69 | 0.966082 |
Target: 5'- uACGG-GUgGUGGcgguGGUgCAGCGGCGGCu -3' miRNA: 3'- -UGUUgCAgCACCu---UCA-GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 100512 | 0.69 | 0.962773 |
Target: 5'- aACAACGUCgGUGcacGUagAGCAGCGGCc -3' miRNA: 3'- -UGUUGCAG-CACcuuCAg-UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 157978 | 0.69 | 0.966082 |
Target: 5'- cACGACGagacgCGcGGAGGaggcucgaCGGCGGCAGCu -3' miRNA: 3'- -UGUUGCa----GCaCCUUCa-------GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 197548 | 0.69 | 0.969179 |
Target: 5'- cGCAGCGUggccggCGUGGcGGcCGaCGGCAGCg -3' miRNA: 3'- -UGUUGCA------GCACCuUCaGUcGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 166057 | 0.69 | 0.969179 |
Target: 5'- -gGGCGUCaUGcGGAGUC-GCGGCGGUu -3' miRNA: 3'- ugUUGCAGcAC-CUUCAGuCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 34322 | 0.69 | 0.969179 |
Target: 5'- gACGugGgcggCGaUGaGAAcGUCAGCGGUGGCg -3' miRNA: 3'- -UGUugCa---GC-AC-CUU-CAGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 77062 | 0.69 | 0.969179 |
Target: 5'- cCGGCcUCGgacGAAG-CGGCAGCGGCg -3' miRNA: 3'- uGUUGcAGCac-CUUCaGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 197232 | 0.7 | 0.945996 |
Target: 5'- cACGAgGUC--GGAGGUCAcgccacaugaagccGCGGCGGCg -3' miRNA: 3'- -UGUUgCAGcaCCUUCAGU--------------CGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 164731 | 0.7 | 0.94286 |
Target: 5'- uGCAACGUCcaGGcgcuGGUguuggcaggcaaCGGCGGCAGCg -3' miRNA: 3'- -UGUUGCAGcaCCu---UCA------------GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 153208 | 0.7 | 0.938179 |
Target: 5'- -aGAUGUCGUGcAGGUCGuGCAGCgugaGGCg -3' miRNA: 3'- ugUUGCAGCACcUUCAGU-CGUCG----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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