Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1962 | 3' | -52.3 | NC_001347.2 | + | 158193 | 0.67 | 0.988584 |
Target: 5'- -gGugGcCGUGGucuGUCGGCAGU-GCg -3' miRNA: 3'- ugUugCaGCACCuu-CAGUCGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 9500 | 0.67 | 0.988584 |
Target: 5'- cGCAACGaUUcUGGAAaugCGGUAGUAGCa -3' miRNA: 3'- -UGUUGC-AGcACCUUca-GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 104327 | 0.67 | 0.987089 |
Target: 5'- cACGACGagGUGGAccgcuGGaucCGGCAcGCGGCc -3' miRNA: 3'- -UGUUGCagCACCU-----UCa--GUCGU-CGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 128436 | 0.67 | 0.987089 |
Target: 5'- cACGGCGccugcugCGUGGccGUCaAGCGGC-GCg -3' miRNA: 3'- -UGUUGCa------GCACCuuCAG-UCGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 93218 | 0.67 | 0.983651 |
Target: 5'- gGCGACGagcUCGcUGaGcGG-CAGCGGCGGCa -3' miRNA: 3'- -UGUUGC---AGC-AC-CuUCaGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 20885 | 0.66 | 0.994947 |
Target: 5'- cCGACGUCGcUGGAAaugCAuCAGCuGCg -3' miRNA: 3'- uGUUGCAGC-ACCUUca-GUcGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 158728 | 0.66 | 0.994947 |
Target: 5'- uGCAGCaGgcgCGcGGcGGuUUAGCAGCGGCu -3' miRNA: 3'- -UGUUG-Ca--GCaCCuUC-AGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 139680 | 0.66 | 0.994872 |
Target: 5'- gGCGGCGUUGcGGcAguuugugcacgacAGUCAGCAGUcgggaAGCu -3' miRNA: 3'- -UGUUGCAGCaCC-U-------------UCAGUCGUCG-----UCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 98022 | 0.66 | 0.994155 |
Target: 5'- cCGGCGUCGgacgcuccuccGGAcgaaacgccgcGG-CGGCAGCGGCc -3' miRNA: 3'- uGUUGCAGCa----------CCU-----------UCaGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 228059 | 0.66 | 0.994155 |
Target: 5'- -aGACGUCGUGGcgaggggauGGGuuuauuggauaUCGGUgaAGCAGCg -3' miRNA: 3'- ugUUGCAGCACC---------UUC-----------AGUCG--UCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 77518 | 0.66 | 0.993267 |
Target: 5'- cGCGugGccgaggaGUGGAAGUU-GCAcGCGGCg -3' miRNA: 3'- -UGUugCag-----CACCUUCAGuCGU-CGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 165091 | 0.66 | 0.993267 |
Target: 5'- gGCAGCGgagGUaaGGAAGgugCGGCGGUGGUc -3' miRNA: 3'- -UGUUGCag-CA--CCUUCa--GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 198117 | 0.66 | 0.992274 |
Target: 5'- --cGCGUUGaGGAuAGUCGcGCGGUGGCa -3' miRNA: 3'- uguUGCAGCaCCU-UCAGU-CGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 185146 | 0.66 | 0.992274 |
Target: 5'- -gGGCGgcaCG-GGcAAGugcuUCAGCAGCAGCu -3' miRNA: 3'- ugUUGCa--GCaCC-UUC----AGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 163214 | 0.66 | 0.991168 |
Target: 5'- --cGCGUaCGUGGc-GUUGGCGGCAcGCa -3' miRNA: 3'- uguUGCA-GCACCuuCAGUCGUCGU-CG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 181051 | 0.66 | 0.991845 |
Target: 5'- uCAGCGUCGUccgcgcgGGCGGCAGCa -3' miRNA: 3'- uGUUGCAGCAccuucagUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 154806 | 0.66 | 0.991168 |
Target: 5'- uACAGCG-CGUGucgauGGcCAGCGGCGcGCa -3' miRNA: 3'- -UGUUGCaGCACcu---UCaGUCGUCGU-CG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 68677 | 0.66 | 0.994947 |
Target: 5'- cACGACGguaGUaGGGAGaUCcaugacGCGGCGGCg -3' miRNA: 3'- -UGUUGCag-CA-CCUUC-AGu-----CGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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