miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 3' -52.3 NC_001347.2 + 150581 0.68 0.981692
Target:  5'- uCAGCGUCGgcuccGGcAG-UAGUGGCGGCg -3'
miRNA:   3'- uGUUGCAGCa----CCuUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 173812 0.68 0.981692
Target:  5'- -uGACGUCcaaagGUGGA--UCgGGCGGCGGCg -3'
miRNA:   3'- ugUUGCAG-----CACCUucAG-UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 77298 0.68 0.981692
Target:  5'- gGCGuCGUCGUacuuGGgcGUgGGCcGCGGCg -3'
miRNA:   3'- -UGUuGCAGCA----CCuuCAgUCGuCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 210071 0.68 0.974757
Target:  5'- aACAcCGUUGguUGGAGaagcguauucgcGUCAGgAGCAGCg -3'
miRNA:   3'- -UGUuGCAGC--ACCUU------------CAGUCgUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 78361 0.68 0.974757
Target:  5'- cCGGCGUgGUGGGAccCGGCGGC-GCc -3'
miRNA:   3'- uGUUGCAgCACCUUcaGUCGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 37935 0.68 0.972068
Target:  5'- cGCGGCG-CGcGGGug-CAGguGCAGCg -3'
miRNA:   3'- -UGUUGCaGCaCCUucaGUCguCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 197548 0.69 0.969179
Target:  5'- cGCAGCGUggccggCGUGGcGGcCGaCGGCAGCg -3'
miRNA:   3'- -UGUUGCA------GCACCuUCaGUcGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 166057 0.69 0.969179
Target:  5'- -gGGCGUCaUGcGGAGUC-GCGGCGGUu -3'
miRNA:   3'- ugUUGCAGcAC-CUUCAGuCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 34322 0.69 0.969179
Target:  5'- gACGugGgcggCGaUGaGAAcGUCAGCGGUGGCg -3'
miRNA:   3'- -UGUugCa---GC-AC-CUU-CAGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 77062 0.69 0.969179
Target:  5'- cCGGCcUCGgacGAAG-CGGCAGCGGCg -3'
miRNA:   3'- uGUUGcAGCac-CUUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 157978 0.69 0.966082
Target:  5'- cACGACGagacgCGcGGAGGaggcucgaCGGCGGCAGCu -3'
miRNA:   3'- -UGUUGCa----GCaCCUUCa-------GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 29737 0.69 0.966082
Target:  5'- -uGugGUgGcUGGGAGUggUGGCGGCAGCc -3'
miRNA:   3'- ugUugCAgC-ACCUUCA--GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 82713 0.69 0.966082
Target:  5'- uACGG-GUgGUGGcgguGGUgCAGCGGCGGCu -3'
miRNA:   3'- -UGUUgCAgCACCu---UCA-GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 100512 0.69 0.962773
Target:  5'- aACAACGUCgGUGcacGUagAGCAGCGGCc -3'
miRNA:   3'- -UGUUGCAG-CACcuuCAg-UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 156455 0.69 0.960683
Target:  5'- uCGACGUCGUuggcgguccGGAAccacGUCaccguaagcagucacAGCGGCAGCg -3'
miRNA:   3'- uGUUGCAGCA---------CCUU----CAG---------------UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 173506 0.69 0.959245
Target:  5'- gACAaaaauuACGUCG-GGAacagcggcaAGUCgcguGGCGGCGGCg -3'
miRNA:   3'- -UGU------UGCAGCaCCU---------UCAG----UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 97894 0.69 0.955494
Target:  5'- aACcACGUCGUcuucGgcGUCgGGCGGCGGCg -3'
miRNA:   3'- -UGuUGCAGCAc---CuuCAG-UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 111999 0.7 0.947305
Target:  5'- uGCGGCGgCuUGGGcAG-CAGCGGCGGCu -3'
miRNA:   3'- -UGUUGCaGcACCU-UCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 197232 0.7 0.945996
Target:  5'- cACGAgGUC--GGAGGUCAcgccacaugaagccGCGGCGGCg -3'
miRNA:   3'- -UGUUgCAGcaCCUUCAGU--------------CGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 164731 0.7 0.94286
Target:  5'- uGCAACGUCcaGGcgcuGGUguuggcaggcaaCGGCGGCAGCg -3'
miRNA:   3'- -UGUUGCAGcaCCu---UCA------------GUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.