miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 3' -52.3 NC_001347.2 + 153208 0.7 0.938179
Target:  5'- -aGAUGUCGUGcAGGUCGuGCAGCgugaGGCg -3'
miRNA:   3'- ugUUGCAGCACcUUCAGU-CGUCG----UCG- -5'
1962 3' -52.3 NC_001347.2 + 7880 0.7 0.933258
Target:  5'- aACGGCGguaGUGaccagguGGUCAGUGGCGGCg -3'
miRNA:   3'- -UGUUGCag-CACcu-----UCAGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 156782 0.71 0.922697
Target:  5'- -uGGCGggaGaagGGAAGgcggCAGCGGCAGCg -3'
miRNA:   3'- ugUUGCag-Ca--CCUUCa---GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 96361 0.71 0.913556
Target:  5'- cGCAuCGcCGUGGAGGgcaacaccaaccaGGCGGCGGCc -3'
miRNA:   3'- -UGUuGCaGCACCUUCag-----------UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 157281 0.71 0.898703
Target:  5'- -aGACGUCGgcGGuccucCAGCAGCAGCu -3'
miRNA:   3'- ugUUGCAGCa-CCuuca-GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 162142 0.71 0.898055
Target:  5'- aGCAGCGUuuugaaaacgggcUGcUGGAAGUCGGCgGGCGGg -3'
miRNA:   3'- -UGUUGCA-------------GC-ACCUUCAGUCG-UCGUCg -5'
1962 3' -52.3 NC_001347.2 + 143004 0.72 0.885301
Target:  5'- gGCGGCgGUgGUGGAggaGGUUgcgccgcaAGCGGCGGCa -3'
miRNA:   3'- -UGUUG-CAgCACCU---UCAG--------UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 76785 0.72 0.876824
Target:  5'- cCAGCGucUCGUGGcuaacggcgcuGUCAGCcAGCGGCa -3'
miRNA:   3'- uGUUGC--AGCACCuu---------CAGUCG-UCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 53711 0.72 0.870997
Target:  5'- gACGACGUUGUGGcugcuauuGGGUCAcagccgcgugccGCGGguGCg -3'
miRNA:   3'- -UGUUGCAGCACC--------UUCAGU------------CGUCguCG- -5'
1962 3' -52.3 NC_001347.2 + 38737 0.72 0.86352
Target:  5'- aGCAACGUCuGUcGGAgcgccGGcugaGGCAGCAGCg -3'
miRNA:   3'- -UGUUGCAG-CA-CCU-----UCag--UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 44043 0.73 0.831578
Target:  5'- gGCAGCGgugguggCGcUGGggGU-GGCGGCAGUg -3'
miRNA:   3'- -UGUUGCa------GC-ACCuuCAgUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 66776 0.73 0.823118
Target:  5'- cCGACGUCcgcccgacgGUGGuGG-CGGCGGCGGCa -3'
miRNA:   3'- uGUUGCAG---------CACCuUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 173648 0.73 0.823118
Target:  5'- uCGGCGUC-UGGGAGgagguggCGGCGGUGGCg -3'
miRNA:   3'- uGUUGCAGcACCUUCa------GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 2152 0.74 0.768985
Target:  5'- -gGugGUCG-GGgcGgacgCGGCAGCAGCa -3'
miRNA:   3'- ugUugCAGCaCCuuCa---GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 203837 0.76 0.680153
Target:  5'- -gGAgGUCGUGGAGG-CAGCGGgGGUg -3'
miRNA:   3'- ugUUgCAGCACCUUCaGUCGUCgUCG- -5'
1962 3' -52.3 NC_001347.2 + 75410 0.79 0.517839
Target:  5'- aGCGGCGgcCGUGGcGG-CGGCAGCGGCg -3'
miRNA:   3'- -UGUUGCa-GCACCuUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 152843 0.8 0.488755
Target:  5'- cACGAUGUCGUGGuuGgCGGCGuGCAGCa -3'
miRNA:   3'- -UGUUGCAGCACCuuCaGUCGU-CGUCG- -5'
1962 3' -52.3 NC_001347.2 + 142570 0.8 0.469798
Target:  5'- gGCGGCGUCGgcGGGAG-CAGCGGgGGCg -3'
miRNA:   3'- -UGUUGCAGCa-CCUUCaGUCGUCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.