miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 3' -52.3 NC_001347.2 + 96361 0.71 0.913556
Target:  5'- cGCAuCGcCGUGGAGGgcaacaccaaccaGGCGGCGGCc -3'
miRNA:   3'- -UGUuGCaGCACCUUCag-----------UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 97894 0.69 0.955494
Target:  5'- aACcACGUCGUcuucGgcGUCgGGCGGCGGCg -3'
miRNA:   3'- -UGuUGCAGCAc---CuuCAG-UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 98022 0.66 0.994155
Target:  5'- cCGGCGUCGgacgcuccuccGGAcgaaacgccgcGG-CGGCAGCGGCc -3'
miRNA:   3'- uGUUGCAGCa----------CCU-----------UCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 100512 0.69 0.962773
Target:  5'- aACAACGUCgGUGcacGUagAGCAGCGGCc -3'
miRNA:   3'- -UGUUGCAG-CACcuuCAg-UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 104327 0.67 0.987089
Target:  5'- cACGACGagGUGGAccgcuGGaucCGGCAcGCGGCc -3'
miRNA:   3'- -UGUUGCagCACCU-----UCa--GUCGU-CGUCG- -5'
1962 3' -52.3 NC_001347.2 + 111999 0.7 0.947305
Target:  5'- uGCGGCGgCuUGGGcAG-CAGCGGCGGCu -3'
miRNA:   3'- -UGUUGCaGcACCU-UCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 128436 0.67 0.987089
Target:  5'- cACGGCGccugcugCGUGGccGUCaAGCGGC-GCg -3'
miRNA:   3'- -UGUUGCa------GCACCuuCAG-UCGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 139680 0.66 0.994872
Target:  5'- gGCGGCGUUGcGGcAguuugugcacgacAGUCAGCAGUcgggaAGCu -3'
miRNA:   3'- -UGUUGCAGCaCC-U-------------UCAGUCGUCG-----UCG- -5'
1962 3' -52.3 NC_001347.2 + 142570 0.8 0.469798
Target:  5'- gGCGGCGUCGgcGGGAG-CAGCGGgGGCg -3'
miRNA:   3'- -UGUUGCAGCa-CCUUCaGUCGUCgUCG- -5'
1962 3' -52.3 NC_001347.2 + 143004 0.72 0.885301
Target:  5'- gGCGGCgGUgGUGGAggaGGUUgcgccgcaAGCGGCGGCa -3'
miRNA:   3'- -UGUUG-CAgCACCU---UCAG--------UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 150581 0.68 0.981692
Target:  5'- uCAGCGUCGgcuccGGcAG-UAGUGGCGGCg -3'
miRNA:   3'- uGUUGCAGCa----CCuUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 152843 0.8 0.488755
Target:  5'- cACGAUGUCGUGGuuGgCGGCGuGCAGCa -3'
miRNA:   3'- -UGUUGCAGCACCuuCaGUCGU-CGUCG- -5'
1962 3' -52.3 NC_001347.2 + 153208 0.7 0.938179
Target:  5'- -aGAUGUCGUGcAGGUCGuGCAGCgugaGGCg -3'
miRNA:   3'- ugUUGCAGCACcUUCAGU-CGUCG----UCG- -5'
1962 3' -52.3 NC_001347.2 + 154806 0.66 0.991168
Target:  5'- uACAGCG-CGUGucgauGGcCAGCGGCGcGCa -3'
miRNA:   3'- -UGUUGCaGCACcu---UCaGUCGUCGU-CG- -5'
1962 3' -52.3 NC_001347.2 + 156455 0.69 0.960683
Target:  5'- uCGACGUCGUuggcgguccGGAAccacGUCaccguaagcagucacAGCGGCAGCg -3'
miRNA:   3'- uGUUGCAGCA---------CCUU----CAG---------------UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 156782 0.71 0.922697
Target:  5'- -uGGCGggaGaagGGAAGgcggCAGCGGCAGCg -3'
miRNA:   3'- ugUUGCag-Ca--CCUUCa---GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 157281 0.71 0.898703
Target:  5'- -aGACGUCGgcGGuccucCAGCAGCAGCu -3'
miRNA:   3'- ugUUGCAGCa-CCuuca-GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 157978 0.69 0.966082
Target:  5'- cACGACGagacgCGcGGAGGaggcucgaCGGCGGCAGCu -3'
miRNA:   3'- -UGUUGCa----GCaCCUUCa-------GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 158193 0.67 0.988584
Target:  5'- -gGugGcCGUGGucuGUCGGCAGU-GCg -3'
miRNA:   3'- ugUugCaGCACCuu-CAGUCGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 158728 0.66 0.994947
Target:  5'- uGCAGCaGgcgCGcGGcGGuUUAGCAGCGGCu -3'
miRNA:   3'- -UGUUG-Ca--GCaCCuUC-AGUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.