miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 3' -52.3 NC_001347.2 + 162142 0.71 0.898055
Target:  5'- aGCAGCGUuuugaaaacgggcUGcUGGAAGUCGGCgGGCGGg -3'
miRNA:   3'- -UGUUGCA-------------GC-ACCUUCAGUCG-UCGUCg -5'
1962 3' -52.3 NC_001347.2 + 163214 0.66 0.991168
Target:  5'- --cGCGUaCGUGGc-GUUGGCGGCAcGCa -3'
miRNA:   3'- uguUGCA-GCACCuuCAGUCGUCGU-CG- -5'
1962 3' -52.3 NC_001347.2 + 164731 0.7 0.94286
Target:  5'- uGCAACGUCcaGGcgcuGGUguuggcaggcaaCGGCGGCAGCg -3'
miRNA:   3'- -UGUUGCAGcaCCu---UCA------------GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 165091 0.66 0.993267
Target:  5'- gGCAGCGgagGUaaGGAAGgugCGGCGGUGGUc -3'
miRNA:   3'- -UGUUGCag-CA--CCUUCa--GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 166057 0.69 0.969179
Target:  5'- -gGGCGUCaUGcGGAGUC-GCGGCGGUu -3'
miRNA:   3'- ugUUGCAGcAC-CUUCAGuCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 173506 0.69 0.959245
Target:  5'- gACAaaaauuACGUCG-GGAacagcggcaAGUCgcguGGCGGCGGCg -3'
miRNA:   3'- -UGU------UGCAGCaCCU---------UCAG----UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 173648 0.73 0.823118
Target:  5'- uCGGCGUC-UGGGAGgagguggCGGCGGUGGCg -3'
miRNA:   3'- uGUUGCAGcACCUUCa------GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 173812 0.68 0.981692
Target:  5'- -uGACGUCcaaagGUGGA--UCgGGCGGCGGCg -3'
miRNA:   3'- ugUUGCAG-----CACCUucAG-UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 174994 0.67 0.98994
Target:  5'- uGguGCGggcCGUGccgguGGAGUC-GCAGCAGCg -3'
miRNA:   3'- -UguUGCa--GCAC-----CUUCAGuCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 181051 0.66 0.991845
Target:  5'- uCAGCGUCGUccgcgcgGGCGGCAGCa -3'
miRNA:   3'- uGUUGCAGCAccuucagUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 185146 0.66 0.992274
Target:  5'- -gGGCGgcaCG-GGcAAGugcuUCAGCAGCAGCu -3'
miRNA:   3'- ugUUGCa--GCaCC-UUC----AGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 188248 0.67 0.98994
Target:  5'- gACGACGagGUGGug--CAGCgugagaaacAGCAGCu -3'
miRNA:   3'- -UGUUGCagCACCuucaGUCG---------UCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 197232 0.7 0.945996
Target:  5'- cACGAgGUC--GGAGGUCAcgccacaugaagccGCGGCGGCg -3'
miRNA:   3'- -UGUUgCAGcaCCUUCAGU--------------CGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 197548 0.69 0.969179
Target:  5'- cGCAGCGUggccggCGUGGcGGcCGaCGGCAGCg -3'
miRNA:   3'- -UGUUGCA------GCACCuUCaGUcGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 198117 0.66 0.992274
Target:  5'- --cGCGUUGaGGAuAGUCGcGCGGUGGCa -3'
miRNA:   3'- uguUGCAGCaCCU-UCAGU-CGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 203837 0.76 0.680153
Target:  5'- -gGAgGUCGUGGAGG-CAGCGGgGGUg -3'
miRNA:   3'- ugUUgCAGCACCUUCaGUCGUCgUCG- -5'
1962 3' -52.3 NC_001347.2 + 210071 0.68 0.974757
Target:  5'- aACAcCGUUGguUGGAGaagcguauucgcGUCAGgAGCAGCg -3'
miRNA:   3'- -UGUuGCAGC--ACCUU------------CAGUCgUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 228059 0.66 0.994155
Target:  5'- -aGACGUCGUGGcgaggggauGGGuuuauuggauaUCGGUgaAGCAGCg -3'
miRNA:   3'- ugUUGCAGCACC---------UUC-----------AGUCG--UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.